BRENDA a resource for Enzyme data and metabolic pathway information. - Dietmar Schomburg; Ida Schomburg; Antje Chang; Oliver Hofmann 001; Christian Ebeling; F. Ehrentreich (German Conference on Bioinformatics, 2001)

Concept-based annotation of enzyme classes. - Oliver Hofmann 001; Dietmar Schomburg (Bioinform., 2005)

The LIFEdb database in 2006. - Alexander Mehrle; Heiko Rosenfelder; Ingo Schupp; Coral del Val; Dorit Arlt; Florian Hahne; Stephanie Bechtel; Jeremy C. Simpson; Oliver Hofmann 001; Winston Hide; Karl-Heinz Glatting; Wolfgang Huber; et al. (Nucleic Acids Res., 2006)

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. - Philippe Rocca-Serra; Marco Brandizi; Eamonn Maguire; Nataliya Sklyar; Chris F. Taylor; Kimberly Begley; Dawn Field; Stephen C. Harris; Winston Hide; Oliver Hofmann 001; Steffen Neumann; Peter Sterk; et al. (Bioinform., 2010)

A Quick Guide to Large-Scale Genomic Data Mining. - Curtis Huttenhower; Oliver Hofmann 001 (PLoS Comput. Biol., 2010)

Live Coverage of Intelligent Systems for Molecular Biology/European Conference on Computational Biology (ISMB/ECCB) 2009. - Allyson L. Lister; Ruchira S. Datta; Oliver Hofmann 001; Roland Krause; Michael Kuhn 004; Bettina Roth; Reinhard Schneider 002 (PLoS Comput. Biol., 2010)

Live Coverage of Scientific Conferences Using Web Technologies. - Allyson L. Lister; Ruchira S. Datta; Oliver Hofmann 001; Roland Krause; Michael Kuhn 004; Bettina Roth; Reinhard Schneider 002 (PLoS Comput. Biol., 2010)

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons. - Shannan J. Ho Sui; Kimberly Begley; Dorothy Reilly; Brad Chapman; Ray McGovern; Philippe Rocca-Serra; Eamonn Maguire; Gabriel M. Altschuler; Terah A. A. Hansen; Ramakrishna Sompallae; Andrei Krivtsov; Ramesh A. Shivdasani; et al. (Nucleic Acids Res., 2012)

CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments. - Emmanuel Dimont; Oliver Hofmann 001; Shannan J. Ho Sui; Alistair R. R. Forrest; Hideya Kawaji; Winston Hide (Bioinform., 2014)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)

bcbioRNASeq: R package for bcbio RNA-seq analysis. - Michael J. Steinbaugh; Lorena Pantano; Rory D. Kirchner; Víctor Barrera; Brad A. Chapman; Mary E. Piper; Meeta Mistry; Radhika S. Khetani; Kayleigh Rutherford; Oliver Hofmann 001; John N. Hutchinson; Shannan J. Ho Sui (F1000Research, 2017)

Crypt4GH: a file format standard enabling native access to encrypted data. - Alexander Senf; Robert Davies; Frédéric Haziza; John Marshall; Juan Ramón Troncoso-Pastoriza; Oliver Hofmann 001; Thomas M. Keane (Bioinform., 2021)

Refget: standardized access to reference sequences. - Andrew D. Yates; Jeremy Adams; Somesh Chaturvedi; Robert Davies; Matthew R. Laird; Rasko Leinonen; Rishi Nag; Nathan C. Sheffield; Oliver Hofmann 001; Thomas M. Keane (Bioinform., 2021)