Using Likelihood-Free Inference to Compare Evolutionary Dynamics of the Protein Networks of H. pylori and P. falciparum. - Oliver Ratmann; Ole Jørgensen 002; Trevor Hinkley; Michael P. H. Stumpf; Sylvia Richardson; Carsten Wiuf (PLoS Comput. Biol., 2007)

FunCat functional inference with belief propagation and feature integration. - Dimitrij Surmeli; Oliver Ratmann; Hans-Werner Mewes; Igor V. Tetko (Comput. Biol. Chem., 2008)

Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series. - David A. Rasmussen; Oliver Ratmann; Katia Koelle (PLoS Comput. Biol., 2011)

Phylodynamic Inference and Model Assessment with Approximate Bayesian Computation: Influenza as a Case Study. - Oliver Ratmann; Gé Donker; Adam Meijer; Christophe Fraser; Katia Koelle (PLoS Comput. Biol., 2012)

Phylogenies from dynamic networks. - Cornelia Metzig; Oliver Ratmann; Daniela Bezemer; Caroline Colijn (PLoS Comput. Biol., 2019)

Estimating fine age structure and time trends in human contact patterns from coarse contact data: The Bayesian rate consistency model. - Shozen Dan; Yu Chen; Yining Chen; Mélodie Monod; Veronika K. Jaeger; Samir Bhatt; André Karch; Oliver Ratmann (PLoS Comput. Biol., 2023)

Artificial intelligence for modelling infectious disease epidemics. - Moritz U. G. Kraemer; Joseph L.-H. Tsui; Serina Chang; Spyros Lytras; Mark P. Khurana; Samantha Vanderslott; Sumali Bajaj; Neil Scheidwasser; Jacob Liam Curran-Sebastian; Elizaveta Semenova; Mengyan Zhang; H. Juliette T. Unwin; et al. (Nat., 2025)

HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data. - Tanya Golubchik; Lucie Abeler-Dörner; Matthew Hall; Chris Wymant; David G. Bonsall; George Macintyre-Cockett; Laura Thomson; Jared M. Baeten; Connie L. Celum; Ronald Galiwango; Barry Kosloff; Mohammed Limbada; et al. (BMC Bioinform., 2025)