PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates. - Oliver Rübel; Gunther H. Weber; Soile V. E. Keränen; Charless C. Fowlkes; Cris L. Luengo Hendriks; Lisa Simirenko; Nameeta Y. Shah; Michael B. Eisen; Mark D. Biggin; Hans Hagen; Damir Sudar; Jitendra Malik; et al. (EuroVis, 2006)

PointCloudXplore: A Visualization Tool for 3D Gene Expression Data. - Oliver Rübel; Gunther H. Weber; Soile V. E. Keränen; Charless C. Fowlkes; Cris L. Luengo Hendriks; Lisa Simirenko; Nameeta Y. Shah; Michael B. Eisen; Mark D. Biggin; Hans Hagen; Damir Sudar; Jitendra Malik; et al. (VLUDS, 2006)

PointCloudXplore 2: Visual Exploration of 3D Gene Expression. - Oliver Rübel; Gunther H. Weber; Min-Yu Huang; E. Wes Bethel; Soile V. E. Keränen; Charless C. Fowlkes; Cris L. Luengo Hendriks; Angela H. DePace; Lisa Simirenko; Michael B. Eisen; Mark D. Biggin; Hans Hagen; et al. (Visualization of Large and Unstructured Data Sets, 2007)

Segmenting Gene Expression Patterns of Early-stage Drosophila Embryos. - Min-Yu Huang; Oliver Rübel; Gunther H. Weber; Cris L. Luengo Hendriks; Mark D. Biggin; Hans Hagen; Bernd Hamann (Visualization in Medicine and Life Sciences, 2008)

Automated Analysis for Detecting Beams in Laser Wakefield Simulations. - Daniela Mayumi Ushizima; Oliver Rübel; Prabhat; Gunther H. Weber; E. Wes Bethel; Cecilia R. Aragon; Cameron G. R. Geddes; Estelle Cormier-Michel; Bernd Hamann; Peter Messmer; Hans Hagen (ICMLA, 2008)

High performance multivariate visual data exploration for extremely large data. - Oliver Rübel; Prabhat; Kesheng Wu; Hank Childs; Jeremy S. Meredith; Cameron G. R. Geddes; Estelle Cormier-Michel; Sean Ahern; Gunther H. Weber; Peter Messmer; Hans Hagen; Bernd Hamann; et al. (SC, 2008)

Visual Exploration of Three-Dimensional Gene Expression Using Physical Views and Linked Abstract Views. - Gunther H. Weber; Oliver Rübel; Min-Yu Huang; Angela H. DePace; Charless C. Fowlkes; Soile V. E. Keränen; Cris L. Luengo Hendriks; Hans Hagen; David W. Knowles; Jitendra Malik; Mark D. Biggin; Bernd Hamann (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Linking automated data analysis and visualization with applications in developmental biology and high-energy physics. - Oliver Rübel (2009)

Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data. - Oliver Rübel; Sean Ahern; E. Wes Bethel; Mark D. Biggin; Hank Childs; Estelle Cormier-Michel; Angela H. DePace; Michael B. Eisen; Charless C. Fowlkes; Cameron G. R. Geddes; Hans Hagen; Bernd Hamann; et al. (ICCS, 2010)

Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data. - Oliver Rübel; Gunther H. Weber; Min-Yu Huang; E. Wes Bethel; Mark D. Biggin; Charless C. Fowlkes; Cris L. Luengo Hendriks; Soile V. E. Keränen; Michael B. Eisen; David W. Knowles; Jitendra Malik; Hans Hagen; et al. (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

Federal market information technology in the post flash crash era: roles for supercomputing. - E. Wes Bethel; David Leinweber; Oliver Rübel; Kesheng Wu (WHPCF@SC, 2011)

Parallel index and query for large scale data analysis. - Jerry Chi-Yuan Chou; Mark Howison; Brian Austin; Kesheng Wu; Ji Qiang; E. Wes Bethel; Arie Shoshani; Oliver Rübel; Prabhat; Robert D. Ryne (SC, 2011)

Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data. - Oliver Rübel; Soile V. E. Keränen; Mark D. Biggin; David W. Knowles; Gunther H. Weber; Hans Hagen; Bernd Hamann; E. Wes Bethel (Visualization in Medicine and Life Sciences II, 2012)

VisIt. - Hank Childs; Eric Brugger; Brad Whitlock; Jeremy S. Meredith; Sean Ahern; David Pugmire; Kathleen Biagas; Mark C. Miller; Cyrus Harrison; Gunther H. Weber; Hari Krishnan; Thomas Fogal; et al. (High Performance Visualization, 2012)

Query-Driven Visualization and Analysis. - Oliver Rübel; E. Wes Bethel; Kesheng Wu (High Performance Visualization, 2012)

Parallel I/O, analysis, and visualization of a trillion particle simulation. - Surendra Byna; Jerry Chi-Yuan Chou; Oliver Rübel; Prabhat; Homa Karimabadi; William S. Daughton; Vadim Roytershteyn; E. Wes Bethel; Mark Howison; Ke-Jou Hsu; Kuan-Wu Lin; Arie Shoshani; et al. (SC, 2012)

A System for Query Based Analysis and Visualization. - Allen R. Sanderson; Brad Whitlock; Oliver Rübel; Hank Childs; Gunther H. Weber; Prabhat; Kenseng Wu (EuroVA@EuroVis, 2012)

TECA: A Parallel Toolkit for Extreme Climate Analysis. - Prabhat; Oliver Rübel; Surendra Byna; Kesheng Wu; Fuyu Li; Michael F. Wehner; Wes Bethel (ICCS, 2012)

Why high performance visual data analytics is both relevant and difficult. - E. Wes Bethel; Prabhat; Surendra Byna; Oliver Rübel; K. John Wu; Michael F. Wehner (Visualization and Data Analysis, 2013)

A big data approach to analyzing market volatility. - Kesheng Wu; E. Wes Bethel; Ming Gu 002; David Leinweber; Oliver Rübel (Algorithmic Finance, 2013)

Feature-Based Analysis of Plasma-Based Particle Acceleration Data. - Oliver Rübel; Cameron G. R. Geddes; Min Chen 005; Estelle Cormier-Michel; E. Wes Bethel (IEEE Trans. Vis. Comput. Graph., 2014)

Usage Pattern-Driven Dynamic Data Layout Reorganization. - Houjun Tang; Surendra Byna; Steve Harenberg; Xiaocheng Zou; Wenzhao Zhang; Kesheng Wu; Bin Dong 002; Oliver Rübel; Kristofer E. Bouchard; Scott Klasky; Nagiza F. Samatova (CCGrid, 2016)

A Multi-Platform Evaluation of the Randomized CX Low-Rank Matrix Factorization in Spark. - Alex Gittens; Jey Kottalam; Jiyan Yang; Michael F. Ringenburg; Jatin Chhugani; Evan Racah; Mohitdeep Singh; Yushu Yao; Curt Fischer; Oliver Rübel; Benjamin P. Bowen; Norman G. Lewis; et al. (IPDPS Workshops, 2016)

WarpIV: In Situ Visualization and Analysis of Ion Accelerator Simulations. - Oliver Rübel; Burlen Loring; Jean-Luc Vay; David P. Grote; Rémi Lehe; Stepan Bulanov; Henri Vincenti; E. Wes Bethel (IEEE Computer Graphics and Applications, 2016)

Methods for Specifying Scientific Data Standards and Modeling Relationships with Applications to Neuroscience. - Oliver Rübel; Max Dougherty; Prabhat; Peter Denes; David Conant; Edward F. Chang; Kristofer E. Bouchard (Frontiers Neuroinformatics, 2016)

International Neuroscience Initiatives through the Lens of High-Performance Computing. - Kristofer E. Bouchard; James B. Aimone; Miyoung Chun; Thomas Dean; Michael Denker; Markus Diesmann; David Donofrio; Loren M. Frank; Narayanan Kasthuri; Christof Koch; Oliver Rübel; Horst D. Simon; et al. (Computer, 2018)

BASTet: Shareable and Reproducible Analysis and Visualization of Mass Spectrometry Imaging Data via OpenMSI. - Oliver Rübel; Benjamin P. Bowen (IEEE Trans. Vis. Comput. Graph., 2018)

HDMF: Hierarchical Data Modeling Framework for Modern Science Data Standards. - Andrew J. Tritt; Oliver Rübel; Benjamin K. Dichter; Ryan Ly; Donghe Kang; Edward F. Chang; Loren M. Frank; Kristofer E. Bouchard (IEEE BigData, 2019)

Predicting and Comparing the Performance of Array Management Libraries. - Donghe Kang; Oliver Rübel; Suren Byna; Spyros Blanas (IPDPS, 2020)

Data Parallel Hypersweeps for in Situ Topological Analysis. - Petar Hristov; Gunther H. Weber; Hamish A. Carr; Oliver Rübel; James P. Ahrens (LDAV, 2020)

Scalable Contour Tree Computation by Data Parallel Peak Pruning. - Hamish A. Carr; Gunther H. Weber; Christopher M. Sewell; Oliver Rübel; Patricia K. Fasel; James P. Ahrens (IEEE Trans. Vis. Comput. Graph., 2021)

Distributed Hierarchical Contour Trees. - Hamish A. Carr; Oliver Rübel; Gunther H. Weber (LDAV, 2022)

FAIR for AI: An interdisciplinary, international, inclusive, and diverse community building perspective. - Eliu A. Huerta; Ben Blaiszik; L. Catherine Brinson; Kristofer E. Bouchard; Daniel Diaz 003; Caterina Doglioni; Javier M. Duarte; Murali Emani; Ian T. Foster; Geoffrey C. Fox; Philip C. Harris; Lukas Heinrich; et al. (CoRR, 2022)

Optimization and Augmentation for Data Parallel Contour Trees. - Hamish A. Carr; Oliver Rübel; Gunther H. Weber; James P. Ahrens (IEEE Trans. Vis. Comput. Graph., 2022)

Methods for Linking Data to Online Resources and Ontologies with Applications to Neurophysiology. - Matthew Avaylon; Ryan Ly; Andrew J. Tritt; Benjamin K. Dichter; Kristofer E. Bouchard; Christopher J. Mungall; Oliver Rübel (CoRR, 2024)

CREIMBO: Cross-Regional Ensemble Interactions in Multi-view Brain Observations. - Noga Mudrik; Ryan Ly; Oliver Rübel; Adam Shabti Charles (ICLR, 2025)

The ECP ALPINE project: In situ and post hoc visualization infrastructure and analysis capabilities for exascale. - James P. Ahrens; Marco Arienti; Utkarsh Ayachit; Janine Bennett; Roba Binyahib; Ayan Biswas; Peer-Timo Bremer; Eric Brugger; Roxana Bujack; Hamish A. Carr; Jieyang Chen; Hank Childs; et al. (Int. J. High Perform. Comput. Appl., 2025)

Distributed Augmentation, Hypersweeps, and Branch Decomposition of Contour Trees for Scientific Exploration. - Mingzhe Li; Hamish A. Carr; Oliver Rübel; Bei Wang 001; Gunther H. Weber (IEEE Trans. Vis. Comput. Graph., 2025)

Extremely Scalable Distributed Computation of Contour Trees via Pre-Simplification. - Mingzhe Li; Hamish A. Carr; Oliver Rübel; Bei Wang 001; Gunther H. Weber (CoRR, 2025)