AQuA Tools: clear and reliable BEDPE operations for 3D genomics. - Maharshi Chakraborty; Laura Morgan; Quin Scacheri; Alexandra D'yan; Hyunmin Kim; Yaw Asante; Diana Chin; Olivia Corradin; Peter C. Scacheri; Richard C. Sallari; Berkley E. Gryder (Bioinform., 2025)