Application of Information Technology: A Web Terminology Server Using UMLS for the Description of Medical Procedures. - Anita Burgun; Patrick Denier; Olivier Bodenreider; Geneviève Botti; Denis Delamarre; Bruno Pouliquen; Philippe Oberlin; Jean M. Lévéque; Bertrand Lukacs; François Kohler; Marius Fieschi; Pierre Le Beux (J. Am. Medical Informatics Assoc., 1997)

Beyond synonymy: exploiting the UMLS semantics in mapping vocabularies. - Olivier Bodenreider; Stuart J. Nelson; William T. Hole; H. Florence Chang (AMIA, 1998)

From French vocabulary to the Unified Medical Language System: A preliminary study. - Olivier Bodenreider; Alexa T. McCray (MedInfo, 1998)

Integration of the analytical and alphabetical ICD10 in a coding help system. Proposal of a theoretical model for the ICD representation. - Christine Bouchet; Olivier Bodenreider; François Kohler (MedInfo, 1998)

A Collaborative Approach to Building a Terminology for Medical Procedures using a Web-based Application : From Specifications to daily use. - Anita Burgun; Olivier Bodenreider; Patrick Denier; Denis Delamarre; Geneviève Botti; Philippe Oberlin; Jean-Michel Léevêque; Marc Brémond; Marius Fieschi; Pierre Le Beux (MedInfo, 1998)

Case Report: Evaluation of the Unified Medical Language System as a Medical Knowledge Source. - Olivier Bodenreider; Anita Burgun; Geneviève Botti; Marius Fieschi; Pierre Le Beux; François Kohler (J. Am. Medical Informatics Assoc., 1998)

Automated Assignment of Medical Subject Headings. - Stuart J. Nelson; Alan R. Aronson; Tamas E. Doszkocs; W. John Wilbur; Olivier Bodenreider; H. Florence Chang; James G. Mork; Alexa T. McCray (AMIA, 1999)

The NLM Indexing Initiative. - Alan R. Aronson; Olivier Bodenreider; Florence Chang; Susanne M. Humphrey; James G. Mork; Stuart J. Nelson; Thomas C. Rindflesch; W. John Wilbur (AMIA, 2000)

Using UMLS semantics for classification purposes. - Olivier Bodenreider (AMIA, 2000)

A Semantic Navigation Tool for the UMLS. - Olivier Bodenreider (AMIA, 2000)

Circular hierarchical relationships in the UMLS: etiology, diagnosis, treatment, complications and prevention. - Olivier Bodenreider (AMIA, 2001)

Mapping the UMLS Semantic Network into general ontologies. - Anita Burgun; Olivier Bodenreider (AMIA, 2001)

Evaluating UMLS strings for natural language processing. - Alexa T. McCray; Olivier Bodenreider; James D. Malley; Allen C. Browne (AMIA, 2001)

Aspects of the taxonomic relation in the biomedical domain. - Anita Burgun; Olivier Bodenreider (FOIS, 2001)

Natural Language Processing, Medical Terminologies, and Ontological Issues for Patient Records and Biomedical Knowledge. - Robert H. Baud; Stephen B. Johnson; Christopher G. Chute; Olivier Bodenreider; Jeremy Rogers; Anita Burgun (MedInfo, 2001)

An Object-oriented Model for Representing Semantic Locality in the UMLS. - Olivier Bodenreider (MedInfo, 2001)

Methods for Exploring the Semantics of the Relationships between Co-occurring UMLS Concepts. - Anita Burgun; Olivier Bodenreider (MedInfo, 2001)

Aggregating UMLS Semantic Types for Reducing Conceptual Complexity. - Alexa T. McCray; Anita Burgun; Olivier Bodenreider (MedInfo, 2001)

Unsupervised, corpus-based method for extending a biomedical terminology. - Olivier Bodenreider; Thomas C. Rindflesch; Anita Burgun (ACL Workshop on Natural Language Processing in the Biomedical Domain, 2002)

GenNav: Visualizing Gene Ontology as a Graph. - Olivier Bodenreider (AMIA, 2002)

Evaluation of the UMLS as a terminology and knowledge resource for biomedical informatics. - Olivier Bodenreider; Joyce A. Mitchell; Alexa T. McCray (AMIA, 2002)

Representation of roles in biomedical ontologies: a case study in functional genomics. - Anita Burgun; Olivier Bodenreider; Franck Le Duff; Fouzia Moussouni; Olivier Loréal (AMIA, 2002)

The lexical properties of the gene ontology. - Alexa T. McCray; Allen C. Browne; Olivier Bodenreider (AMIA, 2002)

From Phenotype to Genotype: Experiences in Navigating the Available Information Resources. - Joyce A. Mitchell; Alexa T. McCray; Olivier Bodenreider (AMIA, 2002)

Assessing the consistency of a biomedical terminology through lexical knowledge. - Olivier Bodenreider; Anita Burgun; Thomas C. Rindflesch (Int. J. Medical Informatics, 2002)

Strength in Numbers: Exploring Redundancy in Hierarchical Relations across Biomedical Terminologies. - Olivier Bodenreider (AMIA, 2003)

Graphical Visualization and Navigation of Genetic Disease Information. - Olivier Bodenreider; Joyce A. Mitchell (AMIA, 2003)

Aligning Representations of Anatomy using Lexical and Structural Methods. - Songmao Zhang; Olivier Bodenreider (AMIA, 2003)

Exploring Adjectival Modification in Biomedical Discourse Across Two Genres. - Olivier Bodenreider; Sergey V. Pakhomov (BioNLP@ACL, 2003)

Evaluation of WordNet as a source of lay knowledge for molecular biology and genetic diseases: A feasibility study. - Olivier Bodenreider; Anita Burgun; Joyce A. Mitchell (MIE, 2003)

An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS®$. - Michael N. Cantor; Indra Neil Sarkar; R. Gelman; Frank W. Hartel; Olivier Bodenreider; Yves A. Lussier (MIE, 2003)

Biomedical Ontologies - Session Introduction. - Olivier Bodenreider; Joyce A. Mitchell; Alexa T. McCray (Pacific Symposium on Biocomputing, 2003)

Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics. - Mehmet Kayaalp 002; Alan R. Aronson; Susanne M. Humphrey; Nicholas C. Ide; Lorraine K. Tanabe; Lawrence H. Smith; Dina Demner-Fushman; Russell F. Loane; James G. Mork; Olivier Bodenreider (TREC, 2003)

Exploring semantic groups through visual approaches. - Olivier Bodenreider; Alexa T. McCray (J. Biomed. Informatics, 2003)

Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study. - Francisco Azuaje; Olivier Bodenreider (BIBE, 2004)

Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships. - Haiying Wang 001; Francisco Azuaje; Olivier Bodenreider; Joaquín Dopazo (CIBCB, 2004)

Investigating subsumption in DL-based terminologies: A Case Study in SNOMED CT . - Olivier Bodenreider; Barry Smith 001; Anand Kumar 005; Anita Burgun (KR-MED, 2004)

Lessons learned from aligning two representations of anatomy. - Songmao Zhang; Peter Mork; Olivier Bodenreider (KR-MED, 2004)

Aligning Knowledge Sources in the UMLS: Methods, Quantitative Results, and Applications. - Olivier Bodenreider; Anita Burgun (MedInfo, 2004)

Comparing Associative Relationships among Equivalent Concepts across Ontologies. - Songmao Zhang; Olivier Bodenreider (MedInfo, 2004)

Session Introduction. - Olivier Bodenreider; Joyce A. Mitchell; Alexa T. McCray (Pacific Symposium on Biocomputing, 2004)

Investigating Implicit Knowledge in Ontologies with Application to the Anatomical Domain. - Songmao Zhang; Olivier Bodenreider (Pacific Symposium on Biocomputing, 2004)

The Unified Medical Language System (UMLS): integrating biomedical terminology. - Olivier Bodenreider (Nucleic Acids Res., 2004)

Of Mice and Men: Aligning Mouse and Human Anatomies. - Olivier Bodenreider; Terry F. Hayamizu; Martin Ringwald; Sherri de Coronado; Songmao Zhang (AMIA, 2005)

Classifying diseases with respect to anatomy: a study in SNOMED CT. - Anita Burgun; Olivier Bodenreider; Fleur Mougin (AMIA, 2005)

Utilizing the UMLS for Semantic Mapping between Terminologies. - Kin Wah Fung; Olivier Bodenreider (AMIA, 2005)

Approaches to Eliminating Cycles in the UMLS Metathesaurus: Naïve vs. Formal. - Fleur Mougin; Olivier Bodenreider (AMIA, 2005)

RxNav: A Progress Report. - Kelly Zeng; Olivier Bodenreider; Stuart J. Nelson (AMIA, 2005)

Alignment of Multiple Ontologies of Anatomy: Deriving Indirect Mappings from Direct Mappings to a Reference. - Songmao Zhang; Olivier Bodenreider (AMIA, 2005)

Ontological research and its applications to the biomedical domain. - Miguel E. Ruiz; Olivier Bodenreider; Eric Little; Padmini Srinivasan (ASIST, 2005)

An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis. - Haiying Wang 001; Francisco Azuaje; Olivier Bodenreider (CBMS, 2005)

Issues in the Classification of Disease Instances with Ontologies. - Anita Burgun; Olivier Bodenreider; Christian Jacquelinet (MIE, 2005)

Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology. - Olivier Bodenreider; Marc Aubry; Anita Burgun (Pacific Symposium on Biocomputing, 2005)

Session Introduction: Biomedical Ontologies. - Olivier Bodenreider; Joyce A. Mitchell; Alexa T. McCray (Pacific Symposium on Biocomputing, 2005)

GenesTrace: Phenomic Knowledge Discovery via Structured Terminology. - Michael N. Cantor; Indra Neil Sarkar; Olivier Bodenreider; Yves A. Lussier (Pacific Symposium on Biocomputing, 2005)

Comparing the Representation of Anatomy in the FMA and SNOMED CT. - Olivier Bodenreider; Songmao Zhang (AMIA, 2006)

Using WordNet to Improve the Mapping of Data Elements to UMLS for Data Sources Integration. - Fleur Mougin; Anita Burgun; Olivier Bodenreider (AMIA, 2006)

Besides Precision & Recall: Exploring Alternative Approaches to Evaluating an Automatic Indexing Tool for MEDLINE. - Aurélie Névéol; Kelly Zeng; Olivier Bodenreider (AMIA, 2006)

Enhancing Biomedical Ontologies through Alignment of Semantic Relationships: Exploratory Approaches. - Lowell Vizenor; Olivier Bodenreider; Lee B. Peters; Alexa T. McCray (AMIA, 2006)

RxNav: A Web Service for Standard Drug Information. - Kelly Zeng; Olivier Bodenreider; John Kilbourne; Stuart J. Nelson (AMIA, 2006)

RxNav: Providing Standard Drug Information. - Kelly Zeng; Olivier Bodenreider; John Kilbourne; Stuart J. Nelson (AMIA, 2006)

Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions. - Francisco Azuaje; Haiying Wang 001; Huiru Zheng; Olivier Bodenreider; Alban Chesneau (ICDM Workshops, 2006)

Session Introduction. - K. Bretonnel Cohen; Olivier Bodenreider; Lynette Hirschman (Pacific Symposium on Biocomputing, 2006)

Session Introduction. - Robert Stevens 001; Olivier Bodenreider; Yves A. Lussier (Pacific Symposium on Biocomputing, 2006)

Experience in Reasoning with the Foundational Model of Anatomy in OWL DL. - Songmao Zhang; Olivier Bodenreider; Christine Golbreich (Pacific Symposium on Biocomputing, 2006)

NLM Anatomical Ontology Alignment System. Results of the 2006 Ontology Alignment Contest. - Songmao Zhang; Olivier Bodenreider (Ontology Matching, 2006)

Aligning Multiple Anatomical Ontologies through a Reference. - Songmao Zhang; Olivier Bodenreider (Ontology Matching, 2006)

Data Integration through data elements: Mapping data elements to terminological resources. - Fleur Mougin; Anita Burgun; Olivier Bodenreider (SMBM, 2006)

Using Dependence Relations in MeSH as a Framework for the Analysis of Disease Information in Medline. - Lowell Vizenor; Olivier Bodenreider (SMBM, 2006)

Bio-ontologies: current trends and future directions. - Olivier Bodenreider; Robert Stevens 001 (Briefings Bioinform., 2006)

Mapping data elements to terminological resources for integrating biomedical data sources. - Fleur Mougin; Anita Burgun; Olivier Bodenreider (BMC Bioinform., 2006)

Law and order: Assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy. - Songmao Zhang; Olivier Bodenreider (Comput. Biol. Medicine, 2006)

The foundational model of anatomy in OWL: Experience and perspectives. - Christine Golbreich; Songmao Zhang; Olivier Bodenreider (J. Web Semant., 2006)

Identifying Mismatches in Alignments of Large Anatomical Ontologies. - Songmao Zhang; Olivier Bodenreider (AMIA, 2007)

From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. - Alan R. Aronson; Olivier Bodenreider; Dina Demner-Fushman; Kin Wah Fung; Vivian K. Lee; James G. Mork; Aurélie Névéol; Lee B. Peters; Willie J. Rogers (BioNLP@ACL, 2007)

Méthodes de mapping situées aux niveaux instance et schéma pour l'intégration de sources de données hétérogènes. - Fleur Mougin; Julie Chabalier; Olivier Bodenreider; Anita Burgun (Actes d'IC, 2007)

Combining Lexical and Semantic Methods of Inter-terminology Mapping Using the UMLS. - Kin Wah Fung; Olivier Bodenreider; Alan R. Aronson; William T. Hole; Suresh Srinivasan (MedInfo, 2007)

From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. - Satya Sanket Sahoo; Kelly Zeng; Olivier Bodenreider; Amit P. Sheth (MedInfo, 2007)

Lessons Learned from Cross-Validating Alignments between Large Anatomical Ontologies. - Songmao Zhang; Olivier Bodenreider (MedInfo, 2007)

Hybrid Alignment Strategy for Anatomical Ontologies: Results of the 2007 Ontology Alignment Contest. - Songmao Zhang; Olivier Bodenreider (OM, 2007)

Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies. - Olivier Bodenreider; Barry Smith 001; Anand Kumar 005; Anita Burgun (Artif. Intell. Medicine, 2007)

Comparing two approaches for aligning representations of anatomy. - Songmao Zhang; Peter Mork; Olivier Bodenreider; Philip A. Bernstein (Artif. Intell. Medicine, 2007)

Advancing translational research with the Semantic Web. - Alan Ruttenberg; Tim Clark; William J. Bug; Matthias Samwald; Olivier Bodenreider; Helen Chen; Donald Doherty; Kerstin Forsberg; Yong Gao; Vipul Kashyap; June Kinoshita; Joanne Luciano; et al. (BMC Bioinform., 2007)

Experience in Aligning Anatomical Ontologies. - Songmao Zhang; Olivier Bodenreider (Int. J. Semantic Web Inf. Syst., 2007)

Issues in Mapping LOINC Laboratory Tests to SNOMED CT. - Olivier Bodenreider (AMIA, 2008)

Auditing the NCI Thesaurus with Semantic Web Technologies. - Fleur Mougin; Olivier Bodenreider (AMIA, 2008)

Using the RxNorm Web Services API for Quality Assurance Purposes. - Lee B. Peters; Olivier Bodenreider (AMIA, 2008)

A Framework for Characterizing Drug Information Sources. - Mark Sharp; Olivier Bodenreider; Nina Wacholder (AMIA, 2008)

Design and Implementation of a Personal Medication Record - MyMedicationList. - Kelly Zeng; Olivier Bodenreider; Stuart J. Nelson (AMIA, 2008)

Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues. - Olivier Bodenreider (DILS, 2008)

Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System. - Fleur Mougin; Anita Burgun; Olivier Bodenreider; Julie Chabalier; Olivier Loréal; Pierre Le Beux (DILS, 2008)

Comparing SNOMED CT and the NCI Thesaurus through Semantic Web Technologies. - Olivier Bodenreider (KR-MED, 2008)

SNOMED CT: Browsing the Browsers. - Jeremy Rogers; Olivier Bodenreider (KR-MED, 2008)

Guest-editorial. - Olivier Bodenreider (Appl. Ontology, 2008)

Ontology Summit 2007 - Ontology, taxonomy, folksonomy: Understanding the distinctions. - Michael Gruninger; Olivier Bodenreider; Frank Olken; Leo Obrst; Peter Yim (Appl. Ontology, 2008)

An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence. - Satya Sanket Sahoo; Olivier Bodenreider; Joni L. Rutter; Karen J. Skinner; Amit P. Sheth (J. Biomed. Informatics, 2008)

Using SNOMED CT in combination with MedDRA for reporting signal detection and adverse drug reactions reporting. - Olivier Bodenreider (AMIA, 2009)

Two approaches to integrating phenotype and clinical information. - Anita Burgun; Fleur Mougin; Olivier Bodenreider (AMIA, 2009)

Provenance Information in Biomedical Knowledge Repositories - A Use Case. - Olivier Bodenreider (SWPM, 2009)

Identifying anatomical concepts associated with ICD10 diseases. - Fleur Mougin; Olivier Bodenreider; Anita Burgun (TIA, 2009)

Special Issue: Biomedical Ontology in Action. - Olivier Bodenreider (Appl. Ontology, 2009)

Alignment of the UMLS semantic network with BioTop: methodology and assessment. - Stefan Schulz 001; Elena Beisswanger; László van den Hoek; Olivier Bodenreider; Erik M. van Mulligen (Bioinform., 2009)

A graph-based approach to auditing RxNorm. - Olivier Bodenreider; Lee B. Peters (J. Biomed. Informatics, 2009)

The caBIG terminology review process. - James J. Cimino; Terry F. Hayamizu; Olivier Bodenreider; Brian Davis; Grace A. Stafford; Martin Ringwald (J. Biomed. Informatics, 2009)

Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS. - Fleur Mougin; Olivier Bodenreider; Anita Burgun (J. Biomed. Informatics, 2009)

Auditing associative relations across two knowledge sources. - Lowell Vizenor; Olivier Bodenreider; Alexa T. McCray (J. Biomed. Informatics, 2009)

Finding Semantic Inconsistencies in UMLS using Answer Set Programming. - Halit Erdogan; Olivier Bodenreider; Esra Erdem 001 (AAAI, 2010)

Integrating Consumer-Oriented Vocabularies with Selected Professional Ones from the UMLS Using Semantic Web Technologies. - Elena Cardillo; Genaro Hernández; Olivier Bodenreider (eHealth, 2010)

A Framework for Comparing Phenotype Annotations of Orthologous Genes. - Olivier Bodenreider; Anita Burgun (MedInfo, 2010)

Exploiting UMLS Semantics for Checking Semantic Consistency among UMLS concepts. - Halit Erdogan; Esra Erdem 001; Olivier Bodenreider (MedInfo, 2010)

Combining Relevance Assignment with Quality of the Evidence to Support Guideline Development. - Marcelo Fiszman; Bruce E. Bray; Dongwook Shin; Halil Kilicoglu; Glen C. Bennett; Olivier Bodenreider; Thomas C. Rindflesch (MedInfo, 2010)

Using the Abstraction Network in Complement to Description Logics for Quality Assurance in Biomedical Terminologies - A Case Study in SNOMED CT. - Duo Helen Wei; Olivier Bodenreider (MedInfo, 2010)

Using SPARQL to Test for Lattices: Application to Quality Assurance in Biomedical Ontologies. - Guo-Qiang Zhang 001; Olivier Bodenreider (ISWC (2), 2010)

Comparing pharmacologic classes in NDF-RT and SNOMED CT. - Jonathan Mortensen; Olivier Bodenreider (Semantic Mining in Biomedicine, 2010)

Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. - Satya Sanket Sahoo; Olivier Bodenreider; Pascal Hitzler; Amit P. Sheth; Krishnaprasad Thirunarayan (SSDBM, 2010)

Extracting Rx information from clinical narrative. - James G. Mork; Olivier Bodenreider; Dina Demner-Fushman; Rezarta Islamaj Dogan; François-Michel Lang; Zhiyong Lu; Aurélie Névéol; Lee B. Peters; Sonya E. Shooshan; Alan R. Aronson (J. Am. Medical Informatics Assoc., 2010)

Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG. - Jyotishman Pathak; Lee B. Peters; Christopher G. Chute; Olivier Bodenreider (J. Am. Medical Informatics Assoc., 2010)

Semantic Predications for Complex Information Needs in Biomedical Literature. - Delroy Cameron; Ramakanth Kavuluru; Olivier Bodenreider; Pablo N. Mendes; Amit P. Sheth; Krishnaprasad Thirunarayan (BIBM, 2011)

The Knowledge-driven Exploration of Integrated Biomedical Knowledge Sources Facilitates the Generation of New Hypotheses. - Vinh Nguyen; Olivier Bodenreider; Todd Minning; Amit P. Sheth (LISC, 2011)

Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature. - Emily Doughty; Attila Kertész-Farkas; Olivier Bodenreider; Gary Thompson; Asa Adadey; Thomas A. Peterson; Maricel G. Kann (Bioinform., 2011)

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. - Joanne S. Luciano; Bosse Andersson; Colin R. Batchelor; Olivier Bodenreider; Tim Clark; Christine K. Denney; Christopher Domarew; Thomas Gambet; Lee Harland; Anja Jentzsch; Vipul Kashyap; Peter J. Kos; et al. (J. Biomed. Semant., 2011)

A unified framework for managing provenance information in translational research. - Satya Sanket Sahoo; Vinh Nguyen; Olivier Bodenreider; Priti Parikh; Todd Minning; Amit P. Sheth (BMC Bioinform., 2011)

Quality Assurance in LOINC using Description Logic. - Tomasz Adamusiak; Olivier Bodenreider (AMIA, 2012)

RxBatch - Batch Operations for RxNorm and NDF-RT APIs. - Lee B. Peters; Olivier Bodenreider; Thang Nguyen 004 (AMIA, 2012)

Issues in Creating and Maintaining Value Sets for Clinical Quality Measures. - Rainer Winnenburg; Olivier Bodenreider (AMIA, 2012)

Comparing drug-class membership in ATC and NDF-RT. - Fleur Mougin; Anita Burgun; Olivier Bodenreider (IHI, 2012)

Ontologies and terminologies: Continuum or dichotomy? - Natalia Grabar; Thierry Hamon; Olivier Bodenreider (Appl. Ontology, 2012)

A mutation-centric approach to identifying pharmacogenomic relations in text. - Bastien Rance; Emily Doughty; Dina Demner-Fushman; Maricel G. Kann; Olivier Bodenreider (J. Biomed. Informatics, 2012)

The NLM Value Set Authority Center at 1 year. - Steven Emrick; Duc Nguyen; Pishing Chiang; Philip Chuang; Maureen Madden; Rainer Winnenburg; Robert C. McClure; Ivor D'Souza; Olivier Bodenreider (AMIA, 2013)

Network Visualization of UMLS Source Vocabularies using Semantic Groups. - Thai Le; Bastien Rance; Olivier Bodenreider (AMIA, 2013)

Displaying Drug Classes in RxNav. - Lee B. Peters; Thang Nguyen 004; Olivier Bodenreider (AMIA, 2013)

Metrics for assessing the quality of value sets in clinical quality measures. - Rainer Winnenburg; Olivier Bodenreider (AMIA, 2013)

Multi-lingual Features of the Unified Medical Language System. - Olivier Bodenreider (CLEF (Working Notes), 2013)

Aligning Pharmacologic Classes Between MeSH and ATC. - Rainer Winnenburg; Laritza Rodriguez; Fiona M. Callaghan; Alfred Sorbello; Ana Szarfman; Olivier Bodenreider (VDOS+DO@ICBO, 2013)

Medical Concept Representation: The Years Beyond 2000. - László Balkányi; Stefan Schulz 001; Ronald Cornet; Olivier Bodenreider (MedInfo, 2013)

The NLM Value Set Authority Center. - Olivier Bodenreider; Duc Nguyen; Pishing Chiang; Philip Chuang; Maureen Madden; Rainer Winnenburg; Robert C. McClure; Steven Emrick; Ivor D'Souza (MedInfo, 2013)

Enabling Complex Queries to Drug Information Sources through Functional Composition. - Lee B. Peters; Jonathan Mortensen; Thang Nguyen 004; Olivier Bodenreider (MedInfo, 2013)

Leveraging Terminological Resources for Mapping between Rare Disease Information Sources. - Bastien Rance; Michelle Snyder; Janine Lewis; Olivier Bodenreider (MedInfo, 2013)

Exploring Pharmacoepidemiologic Groupings of Drugs from a Clinical Perspective. - Rainer Winnenburg; Olivier Bodenreider (MedInfo, 2013)

A graph-based recovery and decomposition of Swanson's hypothesis using semantic predications. - Delroy Cameron; Olivier Bodenreider; Hima Yalamanchili; Tu Danh; Sreeram Vallabhaneni; Krishnaprasad Thirunarayan; Amit P. Sheth; Thomas C. Rindflesch (J. Biomed. Informatics, 2013)

Analyzing U.S. prescription lists with RxNorm and the ATC/DDD Index. - Olivier Bodenreider; Laritza Rodriguez (AMIA, 2014)

Coverage of Rare Disease Names in Standard Terminologies and Implications for Patients, Providers, and Research. - Kin Wah Fung; Rachel L. Richesson; Olivier Bodenreider (AMIA, 2014)

Creating, Maintaining and Publishing Value Sets in the VSAC. - Emir Khatipov; Maureen Madden; Pishing Chiang; Philip Chuang; Duc Nguyen; Ivor D'Souza; Rainer Winnenburg; Olivier Bodenreider; Julia L. Skapik; Robert C. McClure; Steven Emrick (AMIA, 2014)

Automatic coding of Free-Text Medication Data recorded by Research Coordinators. - Laritza Rodriguez; Vojtech Huser; Olivier Bodenreider; James J. Cimino (AMIA, 2014)

Facilitating Reconciliation of Inter-Annotator Disagreements. - Johann Stan; Olivier Bodenreider; Kin Wah Fung; Dina Demner-Fushman (AMIA, 2014)

Desiderata for an authoritative Representation of MeSH in RDF. - Rainer Winnenburg; Olivier Bodenreider (AMIA, 2014)

MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and its application to SNOMED CT. - Guo-Qiang Zhang 001; Wei Zhu 010; Mengmeng Sun; Shiqiang Tao; Olivier Bodenreider; Licong Cui (IEEE BigData, 2014)

RxClass - Navigating between Drug Classes and RxNorm Drugs. - Olivier Bodenreider; Lee B. Peters; Thang Nguyen 004 (ICBO, 2014)

Coverage of Rare Disease Names in Clinical Coding Systems and Ontologies and Implications for Electronic Health Records-Based Research. - Rachel L. Richesson; Kin Wah Fung; Olivier Bodenreider (ICBO, 2014)

Don't like RDF reification?: making statements about statements using singleton property. - Vinh Nguyen; Olivier Bodenreider; Amit P. Sheth (WWW, 2014)

A framework for assessing the consistency of drug classes across sources. - Rainer Winnenburg; Olivier Bodenreider (J. Biomed. Semant., 2014)

Navigating between Drug Classes and RxNorm Drugs with RxClass. - Olivier Bodenreider; Lee B. Peters; Thang Nguyen 004 (AMIA, 2015)

Finding Similar Drug Classes using RxClass. - Thang Nguyen 004; Lee B. Peters; Olivier Bodenreider (AMIA, 2015)

Approaches to Supporting the Analysis of Historical Medication Datasets with RxNorm. - Lee B. Peters; Olivier Bodenreider (AMIA, 2015)

PubMed 'Early Alerts': A Pilot Study to Support Prospective Detection of Emerging Adverse Drug Events. - Alfred Sorbello; Anna Ripple; Olivier Bodenreider (AMIA, 2015)

Extending the coverage of phenotypes in SNOMED CT through post-coordination. - Ferdinand Dhombres; Rainer Winnenburg; James T. Case; Olivier Bodenreider (MedInfo, 2015)

Fingerprinting Biomedical Terminologies - Automatic Classification and Visualization of Biomedical Vocabularies through UMLS Semantic Group Profiles. - Bastien Rance; Thai Le; Olivier Bodenreider (MedInfo, 2015)

Exposing Provenance Metadata Using Different RDF Models. - Gang Fu; Evan Bolton; Núria Queralt-Rosinach; Laura Inés Furlong; Vinh Nguyen; Amit P. Sheth; Olivier Bodenreider; Michel Dumontier (SWAT4LS, 2015)

Evaluating drug-drug interaction information in NDF-RT and DrugBank. - Lee B. Peters; Nathan J. Bahr; Olivier Bodenreider (J. Biomed. Semant., 2015)

Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT. - Rainer Winnenburg; Jonathan M. Mortensen; Olivier Bodenreider (J. Biomed. Semant., 2015)

Exploring adverse drug events at the class level. - Rainer Winnenburg; Alfred Sorbello; Olivier Bodenreider (J. Biomed. Semant., 2015)

On Reasoning with RDF Statements about Statements using Singleton Property Triples. - Vinh Nguyen; Olivier Bodenreider; Krishnaprasad Thirunarayan; Gang Fu; Evan Bolton; Núria Queralt Rosinach; Laura Inés Furlong; Michel Dumontier; Amit P. Sheth (CoRR, 2015)

Context-driven automatic subgraph creation for literature-based discovery. - Delroy Cameron; Ramakanth Kavuluru; Thomas C. Rindflesch; Amit P. Sheth; Krishnaprasad Thirunarayan; Olivier Bodenreider (J. Biomed. Informatics, 2015)

Leveraging MEDLINE indexing for pharmacovigilance - Inherent limitations and mitigation strategies. - Rainer Winnenburg; Alfred Sorbello; Anna Ripple; Rave Harpaz; Joseph M. Tonning; Ana Szarfman; Henry Francis; Olivier Bodenreider (J. Biomed. Informatics, 2015)

The national library of medicine pill image recognition challenge: An initial report. - Ziv Yaniv; Jessica Faruque; Sally E. Howe; Kathel Dunn; David Sharlip; Andrew Bond; Pablo Perillan; Olivier Bodenreider; Michael J. Ackerman; Terry S. Yoo (AIPR, 2016)

Resources for Analyzing Drug Prescription Datasets. - Olivier Bodenreider; Vojtech Huser; Christian G. Reich (AMIA, 2016)

Characterizing the semantic composition of the UMLS Metathesaurus over time. - Olivier Bodenreider; Lee B. Peters (AMIA, 2016)

Assessing the potential risk in drug prescriptions during pregnancy. - Ferdinand Dhombres; Vojtech Huser; Laritza M. Rodriguez; Olivier Bodenreider (AMIA, 2016)

Exploring the Use of ClinicalTrials.gov Trial Results Data for Pharmacovigilance. - Vojtech Huser; Olivier Bodenreider (AMIA, 2016)

NDC Properties in RxNorm. - Lee B. Peters; Olivier Bodenreider (AMIA, 2016)

PubMed 'Early Alerts': Towards Better Precision of Literature Searching for Pharmacovigilance Information based on an Assessment of Relevance Feedback. - Anna Ripple; Alfred Sorbello; Shahrukh Haider; Olivier Bodenreider (AMIA, 2016)

The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight. - Mark L. Homer; Nathan P. Palmer; Olivier Bodenreider; Aurel Cami; Laura Chadwick; Kenneth D. Mandl (CRI, 2016)

Identifying Missing Hierarchical Relations in SNOMED CT from Logical Definitions Based on the Lexical Features of Concept Names. - Olivier Bodenreider (ICBO/BioCreative, 2016)

The digital revolution in phenotyping. - Anika Oellrich; Nigel Collier; Tudor Groza; Dietrich Rebholz-Schuhmann; Nigam Shah; Olivier Bodenreider; Mary Regina Boland; Ivo I. Georgiev; Hongfang Liu; Kevin M. Livingston; Augustin Luna; Ann-Marie Mallon; et al. (Briefings Bioinform., 2016)

Interoperability between phenotypes in research and healthcare terminologies - Investigating partial mappings between HPO and SNOMED CT. - Ferdinand Dhombres; Olivier Bodenreider (J. Biomed. Semant., 2016)

A Formal Graph Model for RDF and Its Implementation. - Vinh Nguyen; Jyoti Leeka; Olivier Bodenreider; Amit P. Sheth (CoRR, 2016)

RxNorm Concept History Service. - Olivier Bodenreider; Lee B. Peters (AMIA, 2017)

RxMix - Use of NLM drug APIs by non-programmers. - Olivier Bodenreider; Lee B. Peters (AMIA, 2017)

Mapping U.S. FDA National Drug Codes to Anatomical-Therapeutic-Chemical Classes using RxNorm. - Fabrício S. P. Kury; Olivier Bodenreider (AMIA, 2017)

RxNav 2.0 - A web-based, mobile-responsive RxNorm browser. - Lee B. Peters; Olivier Bodenreider (AMIA, 2017)

Identifying Potentially Missing Hierarchical Relations in SNOMED CT based on Lexical Features - Impact of Synonyms and Lexico-syntactic Constraints. - Satyajeet Raje; Olivier Bodenreider (AMIA, 2017)

Detecting Adverse Drug Event Safety Signals from MEDLINE Reports: Challenges in Employing Cross-terminology Mapping of MeSH to MedDRA. - Abhivyakti Sawarkar; Alfred Sorbello; Anna Ripple; Olivier Bodenreider (AMIA, 2017)

Investigating the Coverage of Diseases across Biomedical Research and Clinical Ontologies. - Satyajeet Raje; Olivier Bodenreider (CRI, 2017)

Eliciting the Intension of Drug Value Sets - Principles and Quality Assurance Applications. - Nathan J. Bahr; Scott D. Nelson; Rainer Winnenburg; Olivier Bodenreider (MedInfo, 2017)

MetaMap Lite in Excel: Biomedical Named-Entity Recognition for Non-Technical Users. - Ravi Teja Bhupatiraju; Kin Wah Fung; Olivier Bodenreider (MedInfo, 2017)

Trends in Fetal Medicine: A 10-Year Bibliometric Analysis of Prenatal Diagnosis. - Ferdinand Dhombres; Olivier Bodenreider (MedInfo, 2017)

Interoperability of Medication Classification Systems: Lessons Learned Mapping Established Pharmacologic Classes (EPCs) to SNOMED CT. - Scott D. Nelson; Jaqui Parker; Robert F. Lario; Rainer Winnenburg; Mark S. Erlbaum; Michael J. Lincoln; Olivier Bodenreider (MedInfo, 2017)

Terminology Status APIs - Mapping Obsolete Codes to Current RxNorm, SNOMED CT, and LOINC Concepts. - Lee B. Peters; Thang Nguyen 004; Olivier Bodenreider (MedInfo, 2017)

Interoperability of Disease Concepts in Clinical and Research Ontologies: Contrasting Coverage and Structure in the Disease Ontology and SNOMED CT. - Satyajeet Raje; Olivier Bodenreider (MedInfo, 2017)

"Hybrid Topics" - Facilitating the Interpretation of Topics Through the Addition of MeSH Descriptors to Bags of Words. - Zhiguo Yu; Thang Nguyen 004; Ferdinand Dhombres; Todd R. Johnson; Olivier Bodenreider (MedInfo, 2017)

Mining non-lattice subgraphs for detecting missing hierarchical relations and concepts in SNOMED CT. - Licong Cui; Wei Zhu 010; Shiqiang Tao; James T. Case; Olivier Bodenreider; Guo-Qiang Zhang 001 (J. Am. Medical Informatics Assoc., 2017)

Comparison of three commercial knowledge bases for detection of drug-drug interactions in clinical decision support. - Kin Wah Fung; Joan Kapusnik-Uner; Jean Cunningham; Stefanie Higby-Baker; Olivier Bodenreider (J. Am. Medical Informatics Assoc., 2017)

Toward multimodal signal detection of adverse drug reactions. - Rave Harpaz; William DuMouchel; Martijn J. Schuemie; Olivier Bodenreider; Carol Friedman; Eric Horvitz; Anna Ripple; Alfred Sorbello; Ryen W. White; Rainer Winnenburg; Nigam H. Shah (J. Biomed. Informatics, 2017)

Using RxNav for drug analytics - How to interpret obsolete drug identifiers? - Olivier Bodenreider; Lee B. Peters (AMIA, 2018)

Historically Comprehensive Medications Metadata for i2b2 Data Warehouses. - Jay Pedersen; Bret J. Gardner; James R. Campbell 001; Walter S. Campbell; Carol Geary; Lee B. Peters; Olivier Bodenreider; James C. McClay (AMIA, 2018)

RxNav-in-a-Box - A locally-installable version of RxNav and related APIs. - Lee B. Peters; Richard Rice; Olivier Bodenreider (AMIA, 2018)

The New SNOMED CT International Medicinal Product Model. - Olivier Bodenreider; Julie James (ICBO, 2018)

Auditing SNOMED CT hierarchical relations based on lexical features of concepts in non-lattice subgraphs. - Licong Cui; Olivier Bodenreider; Jay Shi; Guo-Qiang Zhang 001 (J. Biomed. Informatics, 2018)

Comparing the Representation of Medicinal Products in RxNorm and SNOMED CT - Consequences on interoperability. - Jean Noël Nikiema; Olivier Bodenreider (ICBO, 2019)

Automatic Identification of Individual Drugs in Death Certificates. - Soon Jye Kho; Amit P. Sheth; Olivier Bodenreider (MedInfo, 2019)

Normalizing Dietary Supplement Product Names Using the RxNorm Model. - Jake Vasilakes; Yadan Fan; Rubina F. Rizvi; Anusha Bompelli; Olivier Bodenreider; Rui Zhang 028 (MedInfo, 2019)

Singleton Property Graph: Adding A Semantic Web Abstraction Layer to Graph Databases. - Vinh Nguyen; Hong Yung Yip; Harsh Thakkar; Qingliang Li; Evan Bolton; Olivier Bodenreider (BlockSW/CKG@ISWC, 2019)

Construction of UMLS Metathesaurus with Knowledge-Infused Deep Learning. - Hong Yung Yip; Vinh Nguyen; Olivier Bodenreider (BlockSW/CKG@ISWC, 2019)

Siamese KG-LSTM: A deep learning model for enriching UMLS Metathesaurus synonymy. - Tien T. T. Tran; Sy V. Nghiem; Van T. Le; Tho Thanh Quan; Vinh Nguyen; Hong Yung Yip; Olivier Bodenreider (KSE, 2020)

The new International Classification of Diseases 11th edition: a comparative analysis with ICD-10 and ICD-10-CM. - Kin Wah Fung; Julia Xu; Olivier Bodenreider (J. Am. Medical Informatics Assoc., 2020)

Assessing the enrichment of dietary supplement coverage in the Unified Medical Language System. - Jake Vasilakes; Anusha Bompelli; Jeffrey R. Bishop; Terrence J. Adam; Olivier Bodenreider; Rui Zhang 028 (J. Am. Medical Informatics Assoc., 2020)

Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. - Kevin Bretonnel Cohen; Anna M. Ripple; Asma Ben Abacha; Olivier Bodenreider; Orin Hargraves; Karin Verspoor; Pierre Zweigenbaum; Dina Demner-Fushman (AMIA, 2021)

Can ICD-11 Replace ICD-10-CM for Morbidity Coding in the U.S.? - Kin Wah Fung; Julia Xu; Shannon McConnell-Lamptey; Donna Pickett; Olivier Bodenreider (AMIA, 2021)

Adding an Attention Layer Improves the Performance of a Neural Network Architecture for Synonymy Prediction in the UMLS Metathesaurus. - Vinh Nguyen; Olivier Bodenreider (MedInfo, 2021)

Sequential Mapping - A Novel Approach to Map from ICD-10-CM to ICD-11. - Julia Xu; Kin Wah Fung; Olivier Bodenreider (MedInfo, 2021)

Biomedical Vocabulary Alignment at Scale in the UMLS Metathesaurus. - Vinh Nguyen; Hong Yung Yip; Olivier Bodenreider (WWW, 2021)

Evaluating Biomedical BERT Models for Vocabulary Alignment at Scale in the UMLS Metathesaurus. - Goonmeet Bajaj; Vinh Nguyen; Thilini Wijesiriwardene; Hong Yung Yip; Vishesh Javangula; Srinivasan Parthasarathy 001; Amit P. Sheth; Olivier Bodenreider (CoRR, 2021)

Feasibility of replacing the ICD-10-CM with the ICD-11 for morbidity coding: A content analysis. - Kin Wah Fung; Julia Xu; Shannon McConnell-Lamptey; Donna Pickett; Olivier Bodenreider (J. Am. Medical Informatics Assoc., 2021)

Evaluating Biomedical Word Embeddings for Vocabulary Alignment at Scale in the UMLS Metathesaurus Using Siamese Networks. - Goonmeet Bajaj; Vinh Nguyen; Thilini Wijesiriwardene; Hong Yung Yip; Vishesh Javangula; Amit P. Sheth; Srinivasan Parthasarathy 001; Olivier Bodenreider (Insights@ACL, 2022)

Powering Semantic Analysis with Bio-ontologies. - Olivier Bodenreider (WWW (Companion Volume), 2022)

Context-Enriched Learning Models for Aligning Biomedical Vocabularies at Scale in the UMLS Metathesaurus. - Vinh Nguyen; Hong Yung Yip; Goonmeet Bajaj; Thilini Wijesiriwardene; Vishesh Javangula; Srinivasan Parthasarathy 001; Amit P. Sheth; Olivier Bodenreider (WWW, 2022)

UBERT: A Novel Language Model for Synonymy Prediction at Scale in the UMLS Metathesaurus. - Thilini Wijesiriwardene; Vinh Nguyen; Goonmeet Bajaj; Hong Yung Yip; Vishesh Javangula; Yuqing Mao; Kin Wah Fung; Srinivasan Parthasarathy 001; Amit P. Sheth; Olivier Bodenreider (CoRR, 2022)

UVA Resources for the Biomedical Vocabulary Alignment at Scale in the UMLS Metathesaurus. - Vinh Nguyen; Olivier Bodenreider (CoRR, 2022)

Solving the Right Problem is Key for Translational NLP: A Case Study in UMLS Vocabulary Insertion. - Bernal Jimenez Gutierrez; Yuqing Mao; Vinh Nguyen; Kin Wah Fung; Yu Su 001; Olivier Bodenreider (EMNLP (Findings), 2023)

A deep learning approach to identify missing is-a relations in SNOMED CT. - Rashmie Abeysinghe; Fengbo Zheng; Elmer V. Bernstam; Jay Shi; Olivier Bodenreider; Licong Cui (J. Am. Medical Informatics Assoc., 2023)

A practical strategy to use the ICD-11 for morbidity coding in the United States without a clinical modification. - Kin Wah Fung; Julia Xu; Shannon McConnell-Lamptey; Donna Pickett; Olivier Bodenreider (J. Am. Medical Informatics Assoc., 2023)

Two complementary AI approaches for predicting UMLS semantic group assignment: heuristic reasoning and deep learning. - Yuqing Mao; Randolph A. Miller; Olivier Bodenreider; Vinh Nguyen; Kin Wah Fung (J. Am. Medical Informatics Assoc., 2023)