Non-rigid Atlas to Subject Registration with Pathologies for Conformal Brain Radiotherapy. - Radu Stefanescu; Olivier Commowick; Grégoire Malandain; Pierre-Yves Bondiau; Nicholas Ayache; Xavier Pennec (MICCAI (1), 2004)

Incorporating Statistical Measures of Anatomical Variability in Atlas-to-Subject Registration for Conformal Brain Radiotherapy. - Olivier Commowick; Radu Stefanescu; Pierre Fillard; Vincent Arsigny; Nicholas Ayache; Xavier Pennec; Grégoire Malandain (MICCAI (2), 2005)

An efficient locally affine framework for the registration of anatomical structures. - Olivier Commowick; Vincent Arsigny; María Jimena Costa; Nicholas Ayache; Grégoire Malandain (ISBI, 2006)

A Log-Euclidean Framework for Statistics on Diffeomorphisms. - Vincent Arsigny; Olivier Commowick; Xavier Pennec; Nicholas Ayache (MICCAI (1), 2006)

A Log-Euclidean Polyaffine Framework for Locally Rigid or Affine Registration. - Vincent Arsigny; Olivier Commowick; Xavier Pennec; Nicholas Ayache (WBIR, 2006)

Efficient Selection of the Most Similar Image in a Database for Critical Structures Segmentation. - Olivier Commowick; Grégoire Malandain (MICCAI (2), 2007)

Création et utilisation d'atlas anatomiques numériques pour la radiothérapie. (Design and Use of Anatomical Atlases for Radiotherapy). - Olivier Commowick (2007)

Detection of DTI White Matter Abnormalities in Multiple Sclerosis Patients. - Olivier Commowick; Pierre Fillard; Olivier Clatz; Simon K. Warfield (MICCAI (1), 2008)

An efficient locally affine framework for the smooth registration of anatomical structures. - Olivier Commowick; Vincent Arsigny; A. Isambert; J. Costa; F. Dhermain; F. Bidault; Pierre-Yves Bondiau; Nicholas Ayache; Grégoire Malandain (Medical Image Anal., 2008)

Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas. - Olivier Commowick; Simon K. Warfield; Grégoire Malandain (MICCAI (1), 2009)

A Fast and Log-Euclidean Polyaffine Framework for Locally Linear Registration. - Vincent Arsigny; Olivier Commowick; Nicholas Ayache; Xavier Pennec (J. Math. Imaging Vis., 2009)

A Continuous STAPLE for Scalar, Vector, and Tensor Images: An Application to DTI Analysis. - Olivier Commowick; Simon K. Warfield (IEEE Trans. Medical Imaging, 2009)

Incorporating Priors on Expert Performance Parameters for Segmentation Validation and Label Fusion: A Maximum a Posteriori STAPLE. - Olivier Commowick; Simon K. Warfield (MICCAI (3), 2010)

Construction of Patient Specific Atlases from Locally Most Similar Anatomical Pieces. - Liliane Ramus; Olivier Commowick; Grégoire Malandain (MICCAI (3), 2010)

Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance From STAPLE. - Olivier Commowick; Simon K. Warfield (IEEE Trans. Medical Imaging, 2010)

Automated detection of white matter fiber bundles. - Ralph O. Suarez; Olivier Commowick; Xavier Tomas-Fernandez; Sanjay P. Prabhu; Simon K. Warfield (ISBI, 2011)

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. - Keelin Murphy; Bram van Ginneken; Joseph M. Reinhardt; Sven Kabus; Kai Ding 003; Xiang Deng; Kunlin Cao; Kaifang Du; Gary E. Christensen; Vincent Garcia; Tom Vercauteren; Nicholas Ayache; et al. (IEEE Trans. Medical Imaging, 2011)

Block-matching strategies for rigid registration of multimodal medical images. - Olivier Commowick; Nicolas Wiest-Daesslé; Sylvain Prima (ISBI, 2012)

MRI Estimation of T 1 Relaxation Time Using a Constrained Optimization Algorithm. - Fang Cao; Olivier Commowick; Elise Bannier; Jean-Christophe Ferré; Gilles Edan; Christian Barillot (MBIA, 2012)

Non-local Robust Detection of DTI White Matter Differences with Small Databases. - Olivier Commowick; Aymeric Stamm (MICCAI (3), 2012)

Automated Diffeomorphic Registration of Anatomical Structures with Rigid Parts: Application to Dynamic Cervical MRI. - Olivier Commowick; Nicolas Wiest-Daesslé; Sylvain Prima (MICCAI (2), 2012)

Registration and Analysis of White Matter Group Differences with a Multi-fiber Model. - Maxime Taquet; Benoit Scherrer; Olivier Commowick; Jurriaan M. Peters; Mustafa Sahin; Benoît Macq; Simon K. Warfield (MICCAI (3), 2012)

Automated delineation of white matter fiber tracts with a multiple region-of-interest approach. - Ralph O. Suarez; Olivier Commowick; Sanjay P. Prabhu; Simon K. Warfield (NeuroImage, 2012)

Estimating A Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE. - Olivier Commowick; Alireza Akhondi Asl; Simon K. Warfield (IEEE Trans. Medical Imaging, 2012)

Adaptive Multi-modal Particle Filtering for Probabilistic White Matter Tractography. - Aymeric Stamm; Olivier Commowick; Christian Barillot; Patrick Pérez (IPMI, 2013)

Semi-automatic classification of lesion patterns in patients with clinically isolated syndrome. - Alessandro Crimi; Olivier Commowick; Jean-Christophe Ferré; Adil Maarouf; Gilles Edan; Christian Barillot (ISBI, 2013)

Using bilateral symmetry to improve non-local means denoising of MR brain images. - Sylvain Prima; Olivier Commowick (ISBI, 2013)

Statistical Analysis of White Matter Integrity for the Clinical Study of Typical Specific Language Impairment in Children. - Emmanuel Vallée; Olivier Commowick; Camille Maumet; Aymeric Stamm; Elisabeth Le Rumeur; Catherine Allaire; Jean-Christophe Ferré; Clément de Guibert; Christian Barillot (CDMRI/MMBC@MICCAI, 2013)

Multiple sclerosis lesions evolution in patients with clinically isolated syndrome. - Alessandro Crimi; Olivier Commowick; Jean-Christophe Ferré; Adil Maarouf; Gilles Edan; Christian Barillot (Image Processing, 2013)

Multimodal rigid-body registration of 3D brain images using bilateral symmetry. - Sylvain Prima; Olivier Commowick (Image Processing, 2013)

Quantitative relaxation templates for the human brain at 3T. - Fang Cao; Olivier Commowick; Camille Maumet; Christian Barillot (ISBI, 2014)

Fast identification of optimal fascicle configurations from standard clinical diffusion MRI using Akaike information criterion. - Aymeric Stamm; Olivier Commowick; Patrick Pérez; Christian Barillot (ISBI, 2014)

Longitudinal Intensity Normalization in Multiple Sclerosis Patients. - Yogesh Karpate; Olivier Commowick; Christian Barillot; Gilles Edan (CLIP@MICCAI, 2014)

A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure. - Maxime Taquet; Benoit Scherrer; Olivier Commowick; Jurriaan M. Peters; Mustafa Sahin; Benoît Macq; Simon K. Warfield (IEEE Trans. Medical Imaging, 2014)

Symmetric block-matching registration for the distortion correction of Echo-Planar images. - Renaud Hédouin; Olivier Commowick; Maxime Taquet; Elise Bannier; Benoit Scherrer; Simon K. Warfield; Christian Barillot (ISBI, 2015)

Probabilistic one class learning for automatic detection of multiple sclerosis lesions. - Yogesh Karpate; Olivier Commowick; Christian Barillot (ISBI, 2015)

Interpolation and Averaging of Multi-Compartment Model Images. - Renaud Hédouin; Olivier Commowick; Aymeric Stamm; Christian Barillot (MICCAI (2), 2015)

Robust detection of multiple sclerosis lesions from intensity-normalized multi-channel MRI. - Yogesh Karpate; Olivier Commowick; Christian Barillot (Image Processing, 2015)

Diffusion MRI abnormalities detection with orientation distribution functions: A multiple sclerosis longitudinal study. - Olivier Commowick; Adil Maarouf; Jean-Christophe Ferré; Jean-Philippe Ranjeva; Gilles Edan; Christian Barillot (Medical Image Anal., 2015)

A Bayesian Model to Assess T_2 Values and Their Changes Over Time in Quantitative MRI. - Benoît Combès; Anne Kerbrat; Olivier Commowick; Christian Barillot (MICCAI (3), 2016)

Comprehensive Maximum Likelihood Estimation of Diffusion Compartment Models Towards Reliable Mapping of Brain Microstructure. - Aymeric Stamm; Olivier Commowick; Simon K. Warfield; Simone Vantini (MICCAI (3), 2016)

Shanoir: Applying the Software as a Service Distribution Model to Manage Brain Imaging Research Repositories. - Christian Barillot; Elise Bannier; Olivier Commowick; Isabelle Corouge; Anthony Baire; Ines Fakhfakh; Justine Guillaumont; Yao Yao; Michaël Kain (Frontiers ICT, 2016)

Imaging biomarkers in multiple Sclerosis: From image analysis to population imaging. - Christian Barillot; Gilles Edan; Olivier Commowick (Medical Image Anal., 2016)

ell _2 Similarity Metrics for Diffusion Multi-Compartment Model Images Registration. - Olivier Commowick; Renaud Hédouin; Emmanuel Caruyer; Christian Barillot (MICCAI (1), 2017)

Longitudinal multiple sclerosis lesion segmentation: Resource and challenge. - Aaron Carass; Snehashis Roy; Amod Jog; Jennifer L. Cuzzocreo; Elizabeth M. Sweeney; Adrian Gherman; Julia Button; James Nguyen; Ferran Prados; Carole H. Sudre; Manuel Jorge Cardoso; Niamh Cawley; et al. (NeuroImage, 2017)

Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions. - Renaud Hédouin; Olivier Commowick; Elise Bannier; Benoit Scherrer; Maxime Taquet; Simon K. Warfield; Christian Barillot (IEEE Trans. Medical Imaging, 2017)

Multi-compartment model of brain tissues from T2 relaxometry MRI using gamma distribution. - Sudhanya Chatterjee; Olivier Commowick; Onur Afacan; Simon K. Warfield; Christian Barillot (ISBI, 2018)

Identification of Gadolinium Contrast Enhanced Regions in MS Lesions Using Brain Tissue Microstructure Information Obtained from Diffusion and T2 Relaxometry MRI. - Sudhanya Chatterjee; Olivier Commowick; Onur Afacan; Simon K. Warfield; Christian Barillot (MICCAI (3), 2018)

Voxel-Wise Comparison with a-contrario Analysis for Automated Segmentation of Multiple Sclerosis Lesions from Multimodal MRI. - Francesca Galassi; Olivier Commowick; Emmanuel Vallée; Christian Barillot (BrainLes@MICCAI (1), 2018)

A Bayes Hilbert Space for Compartment Model Computing in Diffusion MRI. - Aymeric Stamm; Olivier Commowick; Alessandra Menafoglio; Simon K. Warfield (MICCAI (3), 2018)

Unbiased Longitudinal Brain Atlas Creation Using Robust Linear Registration And Log-Euclidean Framework For Diffeomorphisms. - Antoine Legouhy; Olivier Commowick; François Rousseau 002; Christian Barillot (ISBI, 2019)

Geometric Evaluation of Distortion Correction Methods in Diffusion MRI of the Spinal Cord. - Haykel Snoussi; Emmanuel Caruyer; Julien Cohen-Adad; Olivier Commowick; Benoît Combès; Elise Bannier; Anne Kerbrat; Christian Barillot (ISBI, 2019)

Online Atlasing Using an Iterative Centroid. - Antoine Legouhy; Olivier Commowick; François Rousseau 002; Christian Barillot (MICCAI (3), 2019)

Unsupervised Domain Adaptation With Optimal Transport in Multi-Site Segmentation of Multiple Sclerosis Lesions From MRI Data. - Antoine Ackaouy; Nicolas Courty; Emmanuel Vallée; Olivier Commowick; Christian Barillot; Francesca Galassi (Frontiers Comput. Neurosci., 2020)

Multiple sclerosis lesions segmentation from multiple experts: The MICCAI 2016 challenge dataset. - Olivier Commowick; Michaël Kain; Romain Casey; Roxana Ameli; Jean-Christophe Ferré; Anne Kerbrat; Thomas Tourdias; Frédéric Cervenansky; Sorina Camarasu-Pop; Tristan Glatard; Sandra Vukusic; Gilles Edan; et al. (NeuroImage, 2021)

Interpolation and Averaging of Diffusion MRI Multi-Compartment Models. - Renaud Hédouin; Christian Barillot; Olivier Commowick (IEEE Trans. Medical Imaging, 2021)

A Convolutional Wasserstein Distance for Tractography Evaluation: Complementarity Study to State-of-the-Art Measures. - Thomas Durantel; Julie Coloigner; Olivier Commowick (ISBI, 2022)

Reproducibility and Evolution of Diffusion Mri Measurements Within the Cervical Spinal Cord in Multiple Sclerosis. - Haykel Snoussi; Benoît Combès; Olivier Commowick; Elise Bannier; Anne Kerbrat; Julien Cohen-Adad; Christian Barillot; Emmanuel Caruyer (ISBI, 2022)

Biomedical image analysis competitions: The state of current participation practice. - Matthias Eisenmann; Annika Reinke; Vivienn Weru; Minu Dietlinde Tizabi; Fabian Isensee; Tim J. Adler; Patrick Godau; Veronika Cheplygina; Michal Kozubek 001; Sharib Ali; Anubha Gupta; Jan Kybic; et al. (CoRR, 2022)

An Iterative Centroid Approach for Diffeomorphic Online Atlasing. - Antoine Legouhy; François Rousseau 002; Christian Barillot; Olivier Commowick (IEEE Trans. Medical Imaging, 2022)