Glocal alignment: finding rearrangements during alignment. - Michael Brudno; Sanket Malde; Alexander Poliakov; Chuong B. Do; Olivier Couronne; Inna Dubchak; Serafim Batzoglou (ISMB (Supplement of Bioinformatics), 2003)

Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. - Nameeta Y. Shah; Olivier Couronne; Len A. Pennacchio; Michael Brudno; Serafim Batzoglou; E. Wes Bethel; Edward M. Rubin; Bernd Hamann; Inna Dubchak (Bioinform., 2004)