Probing long-range interactions by extracting free energies from genome-wide chromosome conformation capture data. - Saeed Saberi; Pau Farré; Olivier Cuvier; Eldon Emberly (BMC Bioinform., 2015)

Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation. - Raphaël Mourad; Olivier Cuvier (PLoS Comput. Biol., 2016)

Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach. - Raphaël Mourad; Lang Li 001; Olivier Cuvier (PLoS Comput. Biol., 2017)