Numeric and Symbolic Knowledge Representation of Cortex Anatomy Using Web Technologies. - Olivier Dameron; Bernard Gibaud; Xavier Morandi (AIME, 2001)

Representing and sharing numeric and symbolic knowledge of brain cortex anatomy using web technology. - Bernard Gibaud; Olivier Dameron; Xavier Morandi (CARS, 2001)

Towards a sharable numeric and symbolic knowledge base on cerebral cortex anatomy: lessons learned from a prototype. - Olivier Dameron; Bernard Gibaud; Anita Burgun; Xavier Morandi (AMIA, 2002)

How to Represent Medical Ontologies in View of a Semantic Web? - Christine Golbreich; Olivier Dameron; Bernard Gibaud; Anita Burgun (AIME, 2003)

Modelling dependencies between relations to ensure consistency of a cerebral cortex anatomy knowledge base. - Olivier Dameron; Anita Burgun; Xavier Morandi; Bernard Gibaud (MIE, 2003)

Re-use of a multi-purpose knowledge corpus on cortex anatomy for educational purposes. - Bernard Gibaud; Olivier Dameron; Xavier Morandi (MIE, 2003)

Web Ontology Language Requirements w.r.t Expressiveness of Taxonomy and Axioms in Medicine. - Christine Golbreich; Olivier Dameron; Bernard Gibaud; Anita Burgun (ISWC, 2003)

Weaving the biomedical Semantic Web with the Prote'ge' OWL Plugin. - Holger Knublauch; Olivier Dameron; Mark A. Musen (KR-MED, 2004)

Accessing and Manipulating Ontologies Using Web Services. - Olivier Dameron; Natalya Fridman Noy; Holger Knublauch; Mark A. Musen (SWS@ISWC, 2004)

Challenges in Converting Frame-Based Ontology into OWL: the Foundational Model of Anatomy Case-Study. - Olivier Dameron; Daniel L. Rubin; Mark A. Musen (AMIA, 2005)

Use of Description Logic Classification to Reason about Consequences of Penetrating Injuries. - Daniel L. Rubin; Olivier Dameron; Mark A. Musen (AMIA, 2005)

Protégé-OWL: Creating Ontology-Driven Reasoning Applications with the Web Ontology Language. - Daniel L. Rubin; Holger Knublauch; Ray W. Fergerson; Olivier Dameron; Mark A. Musen (AMIA, 2005)

Use Case: Ontology with Rules for identifying brain anatomical structures. - Christine Golbreich; Olivier Bierlaire; Olivier Dameron; Bernard Gibaud (Rule Languages for Interoperability, 2005)

Using ontologies linked with geometric models to reason about penetrating injuries. - Daniel L. Rubin; Olivier Dameron; Yasser Bashir; David Grossman; Parvati Dev; Mark A. Musen (Artif. Intell. Medicine, 2006)

Grading glioma tumors using OWL-DL and NCI Thesaurus. - Gwenaëlle Marquet; Olivier Dameron; Stephan Saikali; Jean Mosser; Anita Burgun (AMIA, 2007)

Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy. - Olivier Dameron; Mark A. Musen; Bernard Gibaud (Artif. Intell. Medicine, 2007)

Bio-ontologies Tutorial. - Olivier Dameron; Julie Chabalier (DILS, 2008)

Gene Regulation Ontology (GRO): Design Principles and Use Cases. - Elena Beisswanger; Vivian Lee; Jung-Jae Kim 001; Dietrich Rebholz-Schuhmann; Andrea Splendiani; Olivier Dameron; Stefan Schulz 001; Udo Hahn (MIE, 2008)

Testing Tactics to Localize De-Identification. - Cyril Grouin; Arnaud Rosier; Olivier Dameron; Pierre Zweigenbaum (MIE, 2009)

Verification of parameters semantic compatibility for semi-automatic web service composition: a generic case study. - Nicolas Lebreton; Christophe Blanchet; Daniela Barreiro Claro; Julie Chabalier; Anita Burgun; Olivier Dameron (iiWAS, 2010)

Mapping BFO and DOLCE. - Lynda Temal; Arnaud Rosier; Olivier Dameron; Anita Burgun (MedInfo, 2010)

Achieving High Research Reporting Quality Through the Use of Computational Ontologies. - Amrapali Zaveri; Luciana Cofiel; Jatin Shah; Shreyasee S. Pradhan; Edwin Chan; Olivier Dameron; Ricardo Pietrobon; Beng Ti Ang (Neuroinformatics, 2010)

Comparing Drools and ontology reasoning approaches for telecardiology decision support. - Pascal Van Hille; Julie Jacques; Julien Taillard; Arnaud Rosier; David Delerue; Anita Burgun; Olivier Dameron (MIE, 2012)

ATOL: The Multi-species Livestock Trait Ontology. - Wiktoria Golik; Olivier Dameron; Jérôme Bugeon; Alice Fatet; Isabelle Hue; Catherine Hurtaud; Matthieu Reichstadt; Marie-Christine Salaün; Jean Vernet; Léa Joret; Frédéric Papazian; Claire Nedellec; et al. (MTSR, 2012)

GO2PUB: Querying PubMed with semantic expansion of gene ontology terms. - Charles Bettembourg; Christian Diot; Anita Burgun; Olivier Dameron (J. Biomed. Semant., 2012)

OWL model of clinical trial eligibility criteria compatible with partially-known information. - Olivier Dameron; Paolo Besana; Oussama Zekri; Annabel Bourde; Anita Burgun; Marc Cuggia (J. Biomed. Semant., 2013)

A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm. - Jean-François Ethier; Olivier Dameron; Vasa Curcin; Mark M. McGilchrist; Robert A. Verheij; Theodoros N. Arvanitis; Adel Taweel; Brendan Delaney; Anita Burgun (J. Am. Medical Informatics Assoc., 2013)

Temporal representation of care trajectories of cancer patients using data from a regional information system: an application in breast cancer. - Gautier Defossez; Alexandre Rollet; Olivier Dameron; Pierre Ingrand (BMC Medical Informatics Decis. Mak., 2014)

Ontology for assessment studies of human-computer-interaction in surgery. - Andrej Machno; Pierre Jannin; Olivier Dameron; Werner Korb; Gerik Scheuermann; Jürgen Meixensberger (Artif. Intell. Medicine, 2015)

Ontology-based methods for analyzing life science data. - Olivier Dameron (2016)

A Similarity Measure Based on Care Trajectories as Sequences of Sets. - Yann Rivault; Nolwenn Le Meur; Olivier Dameron (AIME, 2017)

Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF-β Signaling. - Jean Coquet; Nathalie Théret; Vincent Legagneux; Olivier Dameron (CMSB, 2017)

Converting Alzheimer's Disease Map into a Heavyweight Ontology: A Formal Network to Integrate Data. - Vincent Henry; Ivan Moszer; Olivier Dameron; Marie-Claude Potier; Martin Hofmann-Apitius; Olivier Colliot (DILS, 2018)

Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models. - Méziane Aite; Marie Chevallier; Clémence Frioux; Camille Trottier; Jeanne Got; María Paz Cortés; Sebastián N. Mendoza; Grégory Carrier; Olivier Dameron; Nicolas Guillaudeux; Mauricio Latorre; Nicolás Loira; et al. (PLoS Comput. Biol., 2018)

Increasing Life Science Resources Re-Usability using Semantic Web Technologies. - Marine Louarn; Fabrice Chatonnet; Xavier Garnier; Thierry Fest; Anne Siegel; Olivier Dameron (eScience, 2019)

queryMed: Semantic Web functions for linking pharmacological and medical knowledge to data. - Yann Rivault; Olivier Dameron; Nolwenn Le Meur (Bioinform., 2019)

An Extension of Chronicles Temporal Model with Taxonomies: Application to Epidemiological Studies. - Johanne Bakalara; Thomas Guyet; Olivier Dameron; André Happe; Emmanuel Oger (HEALTHINF, 2021)

Towards a reproducible interactome: semantic-based detection of redundancies to unify protein-protein interaction databases. - Marc Melkonian; Camille Juigné; Olivier Dameron; Gwenaël Rabut; Emmanuelle Becker (Bioinform., 2022)

Improving reusability along the data life cycle: a regulatory circuits case study. - Marine Louarn; Fabrice Chatonnet; Xavier Garnier; Thierry Fest; Anne Siegel; Catherine Faron; Olivier Dameron (J. Biomed. Semant., 2022)

Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies. - Camille Juigné; Olivier Dameron; François Moreews; Florence Gondret; Emmanuelle Becker (Bioinform., 2023)

Phenotypes Extraction from Text: Analysis and Perspective in the LLM Era. - Moussa Baddour; Stéphane Paquelet; Paul Rollier; Marie de Tayrac; Olivier Dameron; Thomas Labbé (IS, 2024)

Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints. - Marine Louarn; Guillaume Collet; Ève Barré; Thierry Fest; Olivier Dameron; Anne Siegel; Fabrice Chatonnet (PLoS Comput. Biol., 2024)