ISHAPE: new rapid and accurate software for haplotyping. - Olivier Delaneau; Cédric Coulonges; Pierre-Yves Boëlle; George Nelson; Jean-Louis Spadoni; Jean-François Zagury (BMC Bioinform., 2007)

Shape-IT: new rapid and accurate algorithm for haplotype inference. - Olivier Delaneau; Cédric Coulonges; Jean-François Zagury (BMC Bioinform., 2008)

Fast and efficient QTL mapper for thousands of molecular phenotypes. - Halit Ongen; Alfonso Buil; Andrew Anand Brown; Emmanouil T. Dermitzakis; Olivier Delaneau (Bioinform., 2016)

Phasing for medical sequencing using rare variants and large haplotype reference panels. - Kevin Sharp; Warren Kretzschmar; Olivier Delaneau; Jonathan Marchini (Bioinform., 2016)

MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets. - Alexandre Fort; Nikolaos I. Panousis; Marco Garieri; Stylianos E. Antonarakis; Tuuli Lappalainen; Emmanouil T. Dermitzakis; Olivier Delaneau (Bioinform., 2017)

The impact of rare variation on gene expression across tissues. - Xin Li 130; Yungil Kim; Emily K. Tsang; Joe R. Davis; Farhan N. Damani; Colby Chiang; Gaelen T. Hess; Zachary Zappala; Benjamin J. Strober; Alexandra J. Scott; Amy Li; Andrea Ganna; et al. (Nat., 2017)

XSI - a genotype compression tool for compressive genomics in large biobanks. - Rick Wertenbroek; Simone Rubinacci; Ioannis Xenarios; Yann Thoma; Olivier Delaneau (Bioinform., 2022)

Mapache: a flexible pipeline to map ancient DNA. - Samuel Neuenschwander; Diana I Cruz Dávalos; Lucas Anchieri; Bárbara Sousa da Mota; Davide Bozzi; Simone Rubinacci; Olivier Delaneau; Simon Rasmussen; Anna-Sapfo Malaspinas (Bioinform., 2023)

A resampling-based approach to share reference panels. - Théo Cavinato; Simone Rubinacci; Anna-Sapfo Malaspinas; Olivier Delaneau (Nat. Comput. Sci., 2024)