MD-TASK: a software suite for analyzing molecular dynamics trajectories. - David K. Brown; David L. Penkler; Olivier Sheik Amamuddy; Caroline J. Ross; Ali Rana Atilgan; Canan Atilgan; Özlem Tastan Bishop (Bioinform., 2017)

Improving fold resistance prediction of HIV-1 against protease and reverse transcriptase inhibitors using artificial neural networks. - Olivier Sheik Amamuddy; Nigel Bishop; Özlem Tastan Bishop (BMC Bioinform., 2017)

MODE-TASK: large-scale protein motion tools. - Caroline J. Ross; Bilal Nizami; Michael Glenister; Olivier Sheik Amamuddy; Ali Rana Atilgan; Canan Atilgan; Özlem Tastan Bishop (Bioinform., 2018)

Impact of Early Pandemic Stage Mutations on Molecular Dynamics of SARS-CoV-2 Mpro. - Olivier Sheik Amamuddy; Gennady M. Verkhivker; Özlem Tastan Bishop (J. Chem. Inf. Model., 2020)