MED-SuMoLig: A New Ligand-Based Screening Tool for Efficient Scaffold Hopping. - Olivier Sperandio; Olivier Andrieu; Maria A. Miteva; Minh-Quang Vo; Marc Souaille; François Delfaud; Bruno O. Villoutreix (J. Chem. Inf. Model., 2007)

FAF-Drugs2: Free ADME/tox filtering tool to assist drug discovery and chemical biology projects. - David Lagorce; Olivier Sperandio; Hervé Galons; Maria A. Miteva; Bruno O. Villoutreix (BMC Bioinform., 2008)

Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity. - Flavien Quintus; Olivier Sperandio; Julien Grynberg; Michel Petitjean; Pierre Tufféry (BMC Bioinform., 2009)

wwLigCSRre: a 3D ligand-based server for hit identification and optimization. - Olivier Sperandio; Michel Petitjean; Pierre Tufféry (Nucleic Acids Res., 2009)

Designing Focused Chemical Libraries Enriched in Protein-Protein Interaction Inhibitors using Machine-Learning Methods. - Christelle Reynès; Hélène Host; Anne-Claude Camproux; Guillaume Laconde; Florence Leroux; Anne Mazars; Benoit Deprez; Robin Fahraeus; Bruno O. Villoutreix; Olivier Sperandio (PLoS Comput. Biol., 2010)

The FAF-Drugs2 server: a multistep engine to prepare electronic chemical compound collections. - David Lagorce; Julien Maupetit; Jonathan B. Baell; Olivier Sperandio; Pierre Tufféry; Maria A. Miteva; Hervé Galons; Bruno O. Villoutreix (Bioinform., 2011)

Which Three-Dimensional Characteristics Make Efficient Inhibitors of Protein-Protein Interactions? - Mélaine A. Kuenemann; Laura M. L. Bourbon; Céline M. Labbé; Bruno O. Villoutreix; Olivier Sperandio (J. Chem. Inf. Model., 2014)

An exploration of the 3D chemical space has highlighted a specific shape profile for the compounds intended to inhibit protein-protein interactions. - Mélaine A. Kuenemann; Laura M. L. Bourbon; Céline M. Labbé; Bruno O. Villoutreix; Olivier Sperandio (BMC Bioinform., 2015)

MTiOpenScreen: a web server for structure-based virtual screening. - Céline M. Labbé; Julien Rey; David Lagorce; Marek Vavrusa; Jérôme Bécot; Olivier Sperandio; Bruno O. Villoutreix; Pierre Tufféry; Maria A. Miteva (Nucleic Acids Res., 2015)

FAF-Drugs3: a web server for compound property calculation and chemical library design. - David Lagorce; Olivier Sperandio; Jonathan B. Baell; Maria A. Miteva; Bruno O. Villoutreix (Nucleic Acids Res., 2015)

iPPI-DB: an online database of modulators of protein-protein interactions. - Céline M. Labbé; Mélaine A. Kuenemann; Barbara Zarzycka; Gert Vriend; Gerry A. F. Nicolaes; David Lagorce; Maria A. Miteva; Bruno O. Villoutreix; Olivier Sperandio (Nucleic Acids Res., 2016)

Privileged Substructures to Modulate Protein-Protein Interactions. - Nicolas Bosc; Mélaine A. Kuenemann; Jérôme Bécot; Marek Vavrusa; Adrien H. Cerdan; Olivier Sperandio (J. Chem. Inf. Model., 2017)

The iPPI-DB initiative: a community-centered database of protein-protein interaction modulators. - Rachel Torchet; Karen Druart; Luis Checa Ruano; Alexandra Moine-Franel; Hélène Borges; Olivia Doppelt-Azeroual; Bryan Brancotte; Fabien Mareuil; Michael Nilges; Hervé Ménager; Olivier Sperandio (Bioinform., 2021)

Phylogenetic analysis of Harmonin homology domains. - Baptiste Colcombet-Cazenave; Karen Druart; Crystel Bonnet; Christine Petit; Olivier Sperandio; Julien Guglielmini; Nicolas Wolff (BMC Bioinform., 2021)

InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions. - Vincent Mallet; Luis Checa Ruano; Alexandra Moine-Franel; Michael Nilges; Karen Druart; Guillaume Bouvier; Olivier Sperandio (Bioinform., 2022)