CX, an algorithm that identifies protruding atoms in proteins. - Alessandro Pintar; Oliviero Carugo; Sándor Pongor (Bioinform., 2002)

DPX: for the analysis of the protein core. - Alessandro Pintar; Oliviero Carugo; Sándor Pongor (Bioinform., 2003)

Prediction of protein polypeptide fragments exposed to the solvent. - Oliviero Carugo (Silico Biol., 2003)

CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures. - Kristian Vlahovicek; Alessandro Pintar; Laavanya Parthasarathi; Oliviero Carugo; Sándor Pongor (Nucleic Acids Res., 2005)

Detailed estimation of bioinformatics prediction reliability through the Fragmented Prediction Performance Plots. - Oliviero Carugo (BMC Bioinform., 2007)

FRASS: the web-server for RNA structural comparison. - Svetlana Kirillova; Silvio C. E. Tosatto; Oliviero Carugo (BMC Bioinform., 2010)

How large B-factors can be in protein crystal structures. - Oliviero Carugo (BMC Bioinform., 2018)

Decline of protein structure rigidity with interatomic distance. - Oliviero Carugo (BMC Bioinform., 2021)

Accuracy of AlphaFold models: Comparison with short N O contacts in atomic resolution protein crystal structures. - Oliviero Carugo (Comput. Biol. Chem., 2024)