Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data. - Jackson Nowotny; Sharif Ahmed; Lingfei Xu; Oluwatosin Oluwadare; Hannah Chen 002; Noelan Hensley; Tuan Trieu; Renzhi Cao; Jianlin Cheng (BMC Bioinform., 2015)

ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data. - Oluwatosin Oluwadare; Jianlin Cheng (BMC Bioinform., 2017)

GenomeFlow: a comprehensive graphical tool for modeling and analyzing 3D genome structure. - Tuan Trieu; Oluwatosin Oluwadare; Julia Wopata; Jianlin Cheng (Bioinform., 2019)

DeepSplicer: An Improved Method of Splice Sites Prediction using Deep Learning. - Victor Akpokiro; Oluwatosin Oluwadare; Jugal Kalita (ICMLA, 2021)

ParticleChromo3D: a Particle Swarm Optimization algorithm for chromosome 3D structure prediction from Hi-C data. - David Vadnais; Michael Middleton; Oluwatosin Oluwadare (BioData Min., 2022)

HiCARN: resolution enhancement of Hi-C data using cascading residual networks. - Parker Hicks; Oluwatosin Oluwadare (Bioinform., 2022)

EnsembleSplice: ensemble deep learning model for splice site prediction. - Victor Akpokiro; Trevor Martin; Oluwatosin Oluwadare (BMC Bioinform., 2022)

TADMaster: a comprehensive web-based tool for the analysis of topologically associated domains. - Sean Higgins; Victor Akpokiro; Allen Westcott; Oluwatosin Oluwadare (BMC Bioinform., 2022)

Comparative study on chromatin loop callers using Hi-C data reveals their effectiveness. - H. M. A. Mohit Chowdhury; Terrance E. Boult; Oluwatosin Oluwadare (BMC Bioinform., 2024)