Intrinsically Disordered Regions May Lower the Hydration Free Energy in Proteins: A Case Study of Nudix Hydrolase in the Bacterium Deinococcus radiodurans. - Omar Awile; Anita Krisko; Ivo F. Sbalzarini; Bojan Zagrovic (PLoS Comput. Biol., 2010)

Fast neighbor lists for adaptive-resolution particle simulations. - Omar Awile; Ferit Büyükkeçeci; Sylvain Reboux; Ivo F. Sbalzarini (Comput. Phys. Commun., 2012)

A portable OpenCL implementation of generic particle-mesh and mesh-particle interpolation in 2D and 3D. - Ferit Büyükkeçeci; Omar Awile; Ivo F. Sbalzarini (Parallel Comput., 2013)

A domain-specific language and scalable middleware for particle-mesh simulations on heterogeneous parallel computers. - Omar Awile (2013)

A Pthreads Wrapper for Fortran 2003. - Omar Awile; Ivo F. Sbalzarini (ACM Trans. Math. Softw., 2014)

A High-Throughput Kalman Filter for Modern SIMD Architectures. - Daniel Hugo Cámpora Pérez; Omar Awile; Cédric Potterat (Euro-Par Workshops, 2017)

Parallelizing and Optimizing LHCb-Kalman for Intel Xeon Phi KNL Processors. - Placido Fernández; David del Rio Astorga; Manuel F. Dolz; Javier Fernández 001; Omar Awile; José Daniel García (PDP, 2018)

An efficient low-rank Kalman filter for modern SIMD architectures. - Daniel Hugo Cámpora Pérez; Omar Awile (Concurr. Comput. Pract. Exp., 2018)

CoreNEURON: Performance and Energy Efficiency Evaluation on Intel and Arm CPUs. - Joel Criado; Marta Garcia-Gasulla; Pramod S. Kumbhar; Omar Awile; Ioannis Magkanaris; Filippo Mantovani (CLUSTER, 2020)

An Optimizing Multi-platform Source-to-source Compiler Framework for the NEURON MODeling Language. - Pramod S. Kumbhar; Omar Awile; Liam Keegan; Jorge Blanco Alonso; James Gonzalo King; Michael L. Hines; Felix Schürmann (ICCS (1), 2020)

Modernizing the NEURON Simulator for Sustainability, Portability, and Performance. - Omar Awile; Pramod S. Kumbhar; Nicolas Cornu; Salvador Dura-Bernal; James Gonzalo King; Olli Lupton; Ioannis Magkanaris; Robert A. McDougal; Adam J. H. Newton; Fernando Pereira; Alexandru Savulescu; Nicholas T. Carnevale; et al. (Frontiers Neuroinformatics, 2022)

STEPS 4.0: Fast and memory-efficient molecular simulations of neurons at the nanoscale. - Weiliang Chen; Tristan Carel; Omar Awile; Nicola Cantarutti; Giacomo Castiglioni; Alessandro Cattabiani; Baudouin Del Marmol; Iain Hepburn; James G. King; Christos Kotsalos; Pramod S. Kumbhar; Jules Lallouette; et al. (Frontiers Neuroinformatics, 2022)

MOD2IR: High-Performance Code Generation for a Biophysically Detailed Neuronal Simulation DSL. - George Mitenkov; Ioannis Magkanaris; Omar Awile; Pramod S. Kumbhar; Felix Schürmann; Alastair F. Donaldson (CC, 2023)

Editorial: Neuroscience, computing, performance, and benchmarks: Why it matters to neuroscience how fast we can compute. - James B. Aimone; Omar Awile; Markus Diesmann; James C. Knight; Thomas Nowotny; Felix Schürmann (Frontiers Neuroinformatics, 2023)