SGAtools: one-stop analysis and visualization of array-based genetic interaction screens. - Omar Wagih; Matej Usaj; Anastasia Baryshnikova; Benjamin VanderSluis; Elena Kuzmin; Michael Costanzo; Chad L. Myers; Brenda J. Andrews; Charles Boone; Leopold Parts (Nucleic Acids Res., 2013)

Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes. - Jeffrey R. Johnson; Silvia D. Santos; Tasha Johnson; Ursula Pieper 001; Marta Strumillo; Omar Wagih; Andrej Sali; Nevan J. Krogan; Pedro Beltrão (PLoS Comput. Biol., 2015)

ggseqlogo: a versatile R package for drawing sequence logos. - Omar Wagih (Bioinform., 2017)

Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast. - Emanuel J. V. Gonçalves; Zrinka Raguz Nakic; Mattia Zampieri; Omar Wagih; David Ochoa; Uwe Sauer; Pedro Beltrão; Julio Saez-Rodriguez (PLoS Comput. Biol., 2017)