Megadepth: efficient coverage quantification for BigWigs and BAMs. - Christopher Wilks; Omar Y. Ahmed; Daniel N. Baker; David Zhang; Leonardo Collado-Torres; Ben Langmead (Bioinform., 2021)

Closed-Loop Diesel Combustion Control Leveraging Ignition Assist. - Omar Y. Ahmed; Robert J. Middleton; Anna G. Stefanopoulou; Kenneth S. Kim; Chol-Bum M. Kweon (IEEE Control. Syst. Lett., 2022)

Taxonomic Classification with Maximal Exact Matches in KATKA Kernels and Minimizer Digests. - Dominika Draesslerová; Omar Y. Ahmed; Travis Gagie; Jan Holub 001; Ben Langmead; Giovanni Manzini; Gonzalo Navarro 001 (SEA, 2024)

Sigmoni: classification of nanopore signal with a compressed pangenome index. - Vikram Shivakumar; Omar Y. Ahmed; Sam Kovaka; Mohsen Zakeri; Ben Langmead (Bioinform., 2024)

StephenHwang/MEMO. - Stephen Hwang; Nathaniel K. Brown; Omar Y. Ahmed; Katharine M. Jenike; Sam Kovaka; Michael C. Schatz; Ben Langmead (DROPS Artifacts, 2024)

StephenHwang/MEMO_experiments. - Stephen Hwang; Nathaniel K. Brown; Omar Y. Ahmed; Katharine M. Jenike; Sam Kovaka; Michael C. Schatz; Ben Langmead (DROPS Artifacts, 2024)

Mem-based pangenome indexing for k-mer queries. - Stephen Hwang; Nathaniel K. Brown; Omar Y. Ahmed; Katharine M. Jenike; Sam Kovaka; Michael C. Schatz; Ben Langmead (Algorithms Mol. Biol., 2025)