Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy. - Pavel Matula; Martin Maska; Ondrej Danek; Petr Matula; Michal Kozubek 001 (ISBI, 2009)

Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model. - Ondrej Danek; Pavel Matula; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia; Martin Maska; Michal Kozubek 001 (SCIA, 2009)

A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms. - Martin Maska; Ondrej Danek; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia; Michal Kozubek 001; Ignacio Fernández García (SCIA, 2009)

A Fast Level Set-Like Algorithm for Region-Based Active Contours. - Martin Maska; Pavel Matula; Ondrej Danek; Michal Kozubek 001 (ISVC (3), 2010)

A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation. - Ondrej Danek; Martin Maska (MEMICS, 2010)

Graph Cuts and Approximation of the Euclidean Metric on Anisotropic Grids. - Ondrej Danek; Pavel Matula (VISAPP (2), 2010)

On Euclidean Metric Approximation via Graph Cuts. - Ondrej Danek; Pavel Matula (VISIGRAPP (Selected Papers), 2010)

An Improved Riemannian Metric Approximation for Graph Cuts. - Ondrej Danek; Pavel Matula (DGCI, 2011)

Smooth Chan-Vese segmentation via graph cuts. - Ondrej Danek; Pavel Matula; Martin Maska; Michal Kozubek 001 (Pattern Recognit. Lett., 2012)

Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model. - Martin Maska; Ondrej Danek; Saray Garasa; Ana Rouzaut; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (IEEE Trans. Medical Imaging, 2013)