The estimation of dimensionality in gene expression data using Nonnegative Matrix Factorization. - Conor J. Kelton; Waishing Lee; Matthew Rusay; Ondrej Maxian; Elana J. Fertig; Michael F. Ochs (BIBM, 2015)

A continuous energy-based immersed boundary method for elastic shells. - Ondrej Maxian; Andrew T. Kassen; Wanda Strychalski (J. Comput. Phys., 2018)

An integral-based spectral method for inextensible slender fibers in Stokes flow. - Ondrej Maxian; Alex Mogilner; Aleksandar Donev (CoRR, 2020)

Computational estimates of mechanical constraints on cell migration through the extracellular matrix. - Ondrej Maxian; Alex Mogilner; Wanda Strychalski (PLoS Comput. Biol., 2020)

An Immersed Boundary Method With Subgrid Resolution and Improved Numerical Stability Applied to Slender Bodies in Stokes Flow. - Ondrej Maxian; Charles S. Peskin (SIAM J. Sci. Comput., 2020)

A fast spectral method for electrostatics in doubly-periodic slit channels. - Ondrej Maxian; Raúl P. Peláez; Leslie Greengard; Aleksandar Donev (CoRR, 2021)

Simulations of dynamically cross-linked actin networks: Morphology, rheology, and hydrodynamic interactions. - Ondrej Maxian; Raúl P. Peláez; Alex Mogilner; Aleksandar Donev (PLoS Comput. Biol., 2021)

The hydrodynamics of a twisting, bending, inextensible fiber in Stokes flow. - Ondrej Maxian; Brennan Sprinkle; Charles S. Peskin; Aleksandar Donev (CoRR, 2022)

Bending fluctuations in semiflexible, inextensible, slender filaments in Stokes flow: towards a spectral discretization. - Ondrej Maxian; Brennan Sprinkle; Aleksandar Donev (CoRR, 2023)

A simulation platform for slender, semiflexible, and inextensible fibers with Brownian hydrodynamics and steric repulsion. - Ondrej Maxian; Aleksandar Donev (CoRR, 2024)