Comparing Mr Imaging Properties of Spiral Trajectories Using the Singular Spectrum of the Analytical Fourier Basis Cross-Correlation Matrix. - Onur Afacan; Dimitris Mitsouras; Dana H. Brooks; Robert V. Mulkern; Frank J. Rybicki (ISBI, 2007)

Increasing Temporal Resolution in Hybrid 3D EPI fMRI Studies Using Unfold. - Onur Afacan; William Scott Hoge; Dana H. Brooks; István Ákos Mórocz (ISBI, 2009)

Improved Multi B-Value Diffusion-Weighted MRI of the Body by Simultaneous Model Estimation and Image Reconstruction (SMEIR). - Moti Freiman; Onur Afacan; Robert V. Mulkern; Simon K. Warfield (MICCAI (3), 2013)

Spatially Constrained Incoherent Motion (SCIM) Model Improves Quantitative Diffusion-Weighted MRI Analysis of Crohn's Disease Patients. - Vahid Taimouri; Moti Freiman; Onur Afacan; Simon K. Warfield (Abdominal Imaging, 2013)

T 2-Relaxometry for Myelin Water Fraction Extraction Using Wald Distribution and Extended Phase Graph. - Alireza Akhondi Asl; Onur Afacan; Robert V. Mulkern; Simon K. Warfield (MICCAI (3), 2014)

Spatially-Constrained Probability Distribution Model of Incoherent Motion (SPIM) in Diffusion Weighted MRI Signals of Crohn's Disease. - Sila Kurugol; Moti Freiman; Onur Afacan; Jeannette M. Perez-Rossello; Michael J. Callahan; Simon K. Warfield (ABDI@MICCAI, 2014)

Accelerated High Spatial Resolution Diffusion-Weighted Imaging. - Benoit Scherrer; Onur Afacan; Maxime Taquet; Sanjay P. Prabhu; Ali Gholipour; Simon K. Warfield (IPMI, 2015)

Motion Compensated Abdominal Diffusion Weighted MRI by Simultaneous Image Registration and Model Estimation (SIR-ME). - Sila Kurugol; Moti Freiman; Onur Afacan; Liran Domachevsky; Jeannette M. Perez-Rossello; Michael J. Callahan; Simon K. Warfield (MICCAI (3), 2015)

Analytic Quantification of Bias and Variance of Coil Sensitivity Profile Estimators for Improved Image Reconstruction in MRI. - Aymeric Stamm; Jolene Singh; Onur Afacan; Simon K. Warfield (MICCAI (2), 2015)

Multi-session complex averaging for high resolution high SNR 3T MR visualization of ex vivo hippocampus and insula. - Aymeric Stamm; Jolene Singh; Benoît Scherrer; Onur Afacan; Simon K. Warfield (Image Processing, 2015)

Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects. - Bahram Marami; Benoit Scherrer; Onur Afacan; Simon K. Warfield; Ali Gholipour (MICCAI (3), 2016)

Spatially-constrained probability distribution model of incoherent motion (SPIM) for abdominal diffusion-weighted MRI. - Sila Kurugol; Moti Freiman; Onur Afacan; Jeannette M. Perez-Rossello; Michael J. Callahan; Simon K. Warfield (Medical Image Anal., 2016)

Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. - Bahram Marami; Benoit Scherrer; Onur Afacan; Burak Erem; Simon K. Warfield; Ali Gholipour (IEEE Trans. Medical Imaging, 2016)

Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. - Sila Kurugol; Bahram Marami; Onur Afacan; Simon K. Warfield; Ali Gholipour (CMMI/RAMBO/SWITCH@MICCAI, 2017)

Motion-robust parameter estimation in abdominal diffusion-weighted MRI by simultaneous image registration and model estimation. - Sila Kurugol; Moti Freiman; Onur Afacan; Liran Domachevsky; Jeannette M. Perez-Rossello; Michael J. Callahan; Simon K. Warfield (Medical Image Anal., 2017)

Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis. - Bahram Marami; Seyed Sadegh Mohseni Salehi; Onur Afacan; Benoit Scherrer; Caitlin K. Rollins; Edward Yang; Judy A. Estroff; Simon K. Warfield; Ali Gholipour (NeuroImage, 2017)

Multi-compartment model of brain tissues from T2 relaxometry MRI using gamma distribution. - Sudhanya Chatterjee; Olivier Commowick; Onur Afacan; Simon K. Warfield; Christian Barillot (ISBI, 2018)

Identification of Gadolinium Contrast Enhanced Regions in MS Lesions Using Brain Tissue Microstructure Information Obtained from Diffusion and T2 Relaxometry MRI. - Sudhanya Chatterjee; Olivier Commowick; Onur Afacan; Simon K. Warfield; Christian Barillot (MICCAI (3), 2018)

Tract-Specific Group Analysis in Fetal Cohorts Using in utero Diffusion Tensor Imaging. - Shadab Khan; Caitlin K. Rollins; Cynthia M. Ortinau; Onur Afacan; Simon K. Warfield; Ali Gholipour (MICCAI (3), 2018)

Deep Plug-and-Play Prior for Parallel MRI Reconstruction. - Ali Pour Yazdanpanah; Onur Afacan; Simon K. Warfield (ICCV Workshops, 2019)

Linear Time Invariant Model Based Motion Correction (LiMo-MoCo) of Dynamic Radial Contrast Enhanced MRI. - Jaume Coll-Font; Onur Afacan; Jeanne Chow; Sila Kurugol (MICCAI (2), 2019)

Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior. - Yao Sui; Onur Afacan; Ali Gholipour; Simon K. Warfield (MICCAI (3), 2019)

Non-learning based deep parallel MRI reconstruction (NLDpMRI). - Ali Pour Yazdanpanah; Onur Afacan; Simon K. Warfield (Image Processing, 2019)

ODE-based Deep Network for MRI Reconstruction. - Ali Pour Yazdanpanah; Onur Afacan; Simon K. Warfield (CoRR, 2019)

Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from in utero images. - Shadab Khan; Lana Vasung; Bahram Marami; Caitlin K. Rollins; Onur Afacan; Cynthia M. Ortinau; Edward Yang; Simon K. Warfield; Ali Gholipour (NeuroImage, 2019)

Dynamic Missing-Data Completion Reduces Leakage of Motion Artifact Caused by Temporal Filtering that Remains After Scrubbing. - Seyhmus Guler; Burak Erem; Alexander Li Cohen; Onur Afacan; Simon K. Warfield (ISBI, 2020)

Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction. - Yao Sui; Onur Afacan; Ali Gholipour; Simon K. Warfield (MICCAI (2), 2020)

SLIMM: Slice localization integrated MRI monitoring. - Yao Sui; Onur Afacan; Ali Gholipour; Simon K. Warfield (NeuroImage, 2020)

3D Deep Learning for Anatomical Structure Segmentation in Multiple Imaging Modalities. - Barbara Villarini; Hykoush Asaturyan; Sila Kurugol; Onur Afacan; Jimmy D. Bell; E. Louise Thomas (CBMS, 2021)

MRI Super-Resolution Through Generative Degradation Learning. - Yao Sui; Onur Afacan; Ali Gholipour; Simon K. Warfield (MICCAI (6), 2021)

Modeling dynamic radial contrast enhanced MRI with linear time invariant systems for motion correction in quantitative assessment of kidney function. - Jaume Coll-Font; Onur Afacan; Jeanne Chow; Richard S. Lee; Simon K. Warfield; Sila Kurugol (Medical Image Anal., 2021)

Improving Automatic Renal Segmentation in Clinically Normal and Abnormal Paediatric DCE-MRI via Contrast Maximisation and Convolutional Networks for Computing Markers of Kidney Function. - Hykoush Asaturyan; Barbara Villarini; Karen Sarao; Jeanne Chow; Onur Afacan; Sila Kurugol (Sensors, 2021)

Gradient-Guided Isotropic MRI Reconstruction From Anisotropic Acquisitions. - Yao Sui; Onur Afacan; Camilo Jaimes; Ali Gholipour; Simon K. Warfield (IEEE Trans. Computational Imaging, 2021)

qDWI-Morph: Motion-Compensated Quantitative Diffusion-Weighted MRI Analysis for Fetal Lung Maturity Assessment. - Yael Zaffrani-Reznikov; Onur Afacan; Sila Kurugol; Simon K. Warfield; Moti Freiman (ECCV Workshops (3), 2022)

SUPER-IVIM-DC: Intra-voxel Incoherent Motion Based Fetal Lung Maturity Assessment from Limited DWI Data Using Supervised Learning Coupled with Data-Consistency. - Noam Korngut; Elad Rotman; Onur Afacan; Sila Kurugol; Yael Zaffrani-Reznikov; Shira Nemirovsky-Rotman; Simon K. Warfield; Moti Freiman (MICCAI (2), 2022)

SynthMap: a generative model for synthesis of 3D datasets for quantitative MRI parameter mapping of myelin water fraction. - Serge Vasylechko Didenko; Simon K. Warfield; Sila Kurugol; Onur Afacan (MIDL, 2022)

Learning the Regularization in DCE-MR Image Reconstruction for Functional Imaging of Kidneys. - Aziz Koçanaogullari; Cemre Ariyurek; Onur Afacan; Sila Kurugol (IEEE Access, 2022)

CORPS: Cost-free Rigorous Pseudo-labeling based on Similarity-ranking for Brain MRI Segmentation. - Can Taylan Sari; Sila Kurugol; Onur Afacan; Simon K. Warfield (CoRR, 2022)

Reducing the Effects of Motion Artifacts in fMRI: A Structured Matrix Completion Approach. - Arvind Balachandrasekaran; Alexander Li Cohen; Onur Afacan; Simon K. Warfield; Ali Gholipour (IEEE Trans. Medical Imaging, 2022)

Scan-Specific Generative Neural Network for MRI Super-Resolution Reconstruction. - Yao Sui; Onur Afacan; Camilo Jaimes; Ali Gholipour; Simon K. Warfield (IEEE Trans. Medical Imaging, 2022)

Self Supervised Denoising Diffusion Probabilistic Models for Abdominal DW-MRI. - Serge Vasylechko; Onur Afacan; Sila Kurugol (CDMRI@MICCAI, 2023)

Advanced Framework for Fetal Diffusion MRI: Dynamic Distortion and Motion Correction. - Haykel Snoussi; Davood Karimi; Onur Afacan; Mustafa Utkur; Ali Gholipour (PIPPI@MICCAI, 2024)

HAITCH: A Framework for Distortion and Motion Correction in Fetal Multi-Shell Diffusion-Weighted MRI. - Haykel Snoussi; Davood Karimi; Onur Afacan; Mustafa Utkur; Ali Gholipour (CoRR, 2024)

Improved myelin water fraction mapping with deep neural networks using synthetically generated 3D data. - Serge Vasylechko Didenko; Simon K. Warfield; Sila Kurugol; Onur Afacan (Medical Image Anal., 2024)

Measuring T1 Relaxation Times at High Resolution from Rapid Brain MRI. - Zhengyong Huang; Hakim Ouaalam; Onur Afacan; Simon K. Warfield; Yao Sui (ISBI, 2025)

Optimizing Respiratory Phase Binning for Improved Motion Correction in Abdominal Diffusion-Weighted MRI. - Michelle Su; Cemre Ariyurek; Serge Vasylechko; Onur Afacan; Sila Kurugol (ISBI, 2025)

IVIM-Morph: Motion-compensated quantitative Intra-voxel Incoherent Motion (IVIM) analysis for functional fetal lung maturity assessment from diffusion-weighted MRI data. - Noga Kertes; Yael Zaffrani-Reznikov; Onur Afacan; Sila Kurugol; Simon K. Warfield; Moti Freiman (Medical Image Anal., 2025)