A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis. - Onur Serçinoglu; Gülin Özcan; Zeynep Kutlu Kabas; Pemra Ozbek (J. Comput. Aided Mol. Des., 2016)

gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations. - Onur Serçinoglu; Pemra Ozbek (Nucleic Acids Res., 2018)

ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism. - Rasim Murat Aydinkal; Onur Serçinoglu; Pemra Ozbek (Nucleic Acids Res., 2019)

Computational investigation of peptide binding stabilities of HLA-B*27 and HLA-B*44 alleles. - Asuman Bunsuz; Onur Serçinoglu; Pemra Ozbek (Comput. Biol. Chem., 2020)

In silico and in vitro assessment of androgen receptor antagonists. - Onur Serçinoglu; Ceyhun Bereketoglu; Per-Erik Olsson; Ajay Pradhan (Comput. Biol. Chem., 2021)

Unraveling the Allosteric Communication Mechanisms in T-Cell Receptor-Peptide-Loaded Major Histocompatibility Complex Dynamics Using Molecular Dynamics Simulations: An Approach Based on Dynamic Cross Correlation Maps and Residue Interaction Energy Calculations. - Elif Naz Bingöl; Onur Serçinoglu; Pemra Ozbek (J. Chem. Inf. Model., 2021)