LenVarDB: database of length-variant protein domains. - Eshita Mutt; Oommen K. Mathew; Ramanathan Sowdhamini (Nucleic Acids Res., 2014)

DOCKSCORE: a webserver for ranking protein-protein docked poses. - Sony Malhotra; Oommen K. Mathew; Ramanathan Sowdhamini (BMC Bioinform., 2015)

RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information. - Pritha Ghosh; Oommen K. Mathew; Ramanathan Sowdhamini (BMC Bioinform., 2016)

PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features. - Arumugam Gandhimathi; Pritha Ghosh; Sridhar Hariharaputran; Oommen K. Mathew; Ramanathan Sowdhamini (Nucleic Acids Res., 2016)

PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe. - Pritha Ghosh; Teerna Bhattacharyya; Oommen K. Mathew; Ramanathan Sowdhamini (Database J. Biol. Databases Curation, 2019)

Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses. - Andrew C. Liu; Krishna Patel; Ramya Dhatri Vunikili; Kipp W. Johnson; Fahad Abdu; Shivani Kamath Belman; Benjamin S. Glicksberg; Pratyush Tandale; Roberto Fontanez; Oommen K. Mathew; Andrew Kasarskis; Priyabrata Mukherjee; et al. (Briefings Bioinform., 2020)

PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe. - Teerna Bhattacharyya; Soumya Nayak; Smit Goswami; Vasundhara Gadiyaram; Oommen K. Mathew; Ramanathan Sowdhamini (Database J. Biol. Databases Curation, 2022)

CNN-BLSTM based deep learning framework for eukaryotic kinome classification: An explainability based approach. - Chinju John; Jayakrushna Sahoo; Irish K. Sajan; Manu Madhavan; Oommen K. Mathew (Comput. Biol. Chem., 2024)