The Impact of Different Sources of Fluctuations on Mutual Information in Biochemical Networks. - Michael Chevalier; Ophelia S. Venturelli; Hana El-Samad (PLoS Comput. Biol., 2015)

Scalable nonlinear programming framework for parameter estimation in dynamic biological system models. - Sungho Shin; Ophelia S. Venturelli; Victor M. Zavala (PLoS Comput. Biol., 2019)

Optimizing the Spatial Topology of Bacterial Relay Systems: Delay Minimization. - Mustafa Can Gursoy; Sonali Gupta; Ophelia S. Venturelli; Urbashi Mitra (ICC, 2022)

Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions. - Jaron C. Thompson; Victor M. Zavala; Ophelia S. Venturelli (PLoS Comput. Biol., 2023)

A Parametric Bayesian Optimization Framework for Batch Dynamical Systems. - Jaron C. Thompson; Lloyd MacKinnon; Ophelia S. Venturelli; Victor M. Zavala (ACC, 2024)