ModLink+: improving fold recognition by using protein-protein interactions. - Oriol Fornes; Ramon Aragues; Jordi Espadaler; Marc A. Martí-Renom; Andrej Sali; Baldo Oliva (Bioinform., 2009)

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. - Anthony Mathelier; Oriol Fornes; David J. Arenillas; Chih-Yu Chen; Grégoire Denay; Jessica J. Y. Lee; Wenqiang Shi; Casper Shyr; Ge Tan; Rebecca Worsley-Hunt; Allen W. Zhang; François Parcy; et al. (Nucleic Acids Res., 2016)

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. - Aziz Khan 001; Oriol Fornes; Arnaud Stigliani; Marius Gheorghe; Jaime Abraham Castro-Mondragón; Robin van der Lee; Adrien Bessy; Jeanne Chèneby; Shubhada R. Kulkarni; Ge Tan; Damir Baranasic; David J. Arenillas; et al. (Nucleic Acids Res., 2018)

Gene expression models based on transcription factor binding events confer insight into functional cis-regulatory variants. - Wenqiang Shi; Oriol Fornes; Wyeth W. Wasserman (Bioinform., 2019)

JASPAR 2020: update of the open-access database of transcription factor binding profiles. - Oriol Fornes; Jaime Abraham Castro-Mondragón; Aziz Khan 001; Robin van der Lee; Xi Zhang; Phillip Andrew Richmond; Bhavi P. Modi; Solenne Correard; Marius Gheorghe; Damir Baranasic; Walter Santana-Garcia; Ge Tan; et al. (Nucleic Acids Res., 2020)

SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions. - Joaquim Aguirre-Plans; Alberto Meseguer; Ruben Molina-Fernandez; Manuel Alejandro Marín-López; Gaurav Jumde; Kevin Casanova; Jaume Bonet; Oriol Fornes; Narcis Fernandez-Fuentes; Baldo Oliva (BMC Bioinform., 2021)

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. - Jaime Abraham Castro-Mondragón; Rafael Riudavets Puig; Ieva Rauluseviciute; Roza Berhanu lemma; Laura Turchi; Romain Blanc-Mathieu; Jeremy Lucas; Paul Boddie; Aziz Khan 001; Nicolás Manosalva Pérez; Oriol Fornes; Tiffany Y. Leung; et al. (Nucleic Acids Res., 2022)

OnTarget: in silico design of MiniPromoters for targeted delivery of expression. - Oriol Fornes; Tamar Vered Av-Shalom; Andrea J. Korecki; Rachelle A. Farkas; David J. Arenillas; Anthony Mathelier; Elizabeth M. Simpson; Wyeth W. Wasserman (Nucleic Acids Res., 2023)

SBILib: a handle for protein modeling and engineering. - Patrick Gohl; Jaume Bonet; Oriol Fornes; Joan Planas-Iglesias; Narcis Fernandez-Fuentes; Baldo Oliva (Bioinform., 2023)