Efficient Algorithms for Quantitative Trait Loci Mapping Problems. - Kajsa Ljungberg; Sverker Holmgren; Örjan Carlborg (J. Comput. Biol., 2002)

Simultaneous search for multiple QTL using the global optimization algorithm DIRECT. - Kajsa Ljungberg; Sverker Holmgren; Örjan Carlborg (Bioinform., 2004)

Methodological aspects of the genetic dissection of gene expression. - Örjan Carlborg; D. J. De Koning; Kenneth F. Manly; Elissa J. Chesler; Robert W. Williams; Chris S. Haley (Bioinform., 2005)

A general and efficient method for estimating continuous IBD functions for use in genome scans for QTL. - Francois Besnier; Örjan Carlborg (BMC Bioinform., 2007)

cnF2freq: Efficient Determination of Genotype and Haplotype Probabilities in Outbred Populations Using Markov Models. - Carl Nettelblad; Sverker Holmgren; Lucy Crooks; Örjan Carlborg (BICoB, 2009)

cgmisc: enhanced genome-wide association analyses and visualization. - Marcin Kierczak; Jagoda Jablonska; Simon K. G. Forsberg; Matteo Bianchi; Katarina Tengvall; Mats E. Pettersson; Veronika Scholz; Jennifer R. S. Meadows; Patric Jern; Örjan Carlborg; Kerstin Lindblad-Toh (Bioinform., 2015)