A SAT-Based Approach to Multiple Sequence Alignment. - Steven D. Prestwich; Desmond G. Higgins; Orla O'Sullivan (CP, 2003)

APDB: a novel measure for benchmarking sequence alignment methods without reference alignments. - Orla O'Sullivan; Mark Zehnder; Desmond G. Higgins; Philipp Bucher; Aurélien Grosdidier; Cédric Notredame (ISMB (Supplement of Bioinformatics), 2003)

Evaluation of iterative alignment algorithms for multiple alignment. - Iain M. Wallace; Orla O'Sullivan; Desmond G. Higgins (Bioinform., 2005)

Binding Process Analysis of Bacterial-based AND Logic Gates. - Daniel P. Martins; Sasitharan Balasubramaniam; Paul D. Cotter; Orla O'Sullivan (NANOCOM, 2021)

A Graph-Based Molecular Communications Model Analysis of the Human Gut Bacteriome. - Samitha Somathilaka; Daniel P. Martins; Wiley Barton; Orla O'Sullivan; Paul D. Cotter; Sasitharan Balasubramaniam (IEEE J. Biomed. Health Informatics, 2022)