spatialTIME and iTIME: R package and Shiny application for visualization and analysis of immunofluorescence data. - Jordan H. Creed; Christopher M. Wilson; Alex C. Soupir; Christelle M. Colin-Leitzinger; Gregory J. Kimmel; Oscar E. Ospina; Nicholas H. Chakiryan; Joseph Markowitz; Lauren C. Peres; Anna Coghill; Brooke L. Fridley (Bioinform., 2021)

spatialGE: quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics. - Oscar E. Ospina; Christopher M. Wilson; Alex C. Soupir; Anders Berglund; Inna Smalley; Kenneth Y. Tsai; Brooke L. Fridley (Bioinform., 2022)

scSpatialSIM: a simulator of spatial single-cell molecular data. - Alex C. Soupir; Julia Wrobel; Jordan H. Creed; Oscar E. Ospina; Christopher M. Wilson; Brandon J. Manley; Lauren C. Peres; Brooke L. Fridley (SoftwareX, 2025)