A response to Yu et al. "A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array", BMC Bioinformatics 2007, 8: 145. - Oscar M. Rueda; Ramón Díaz-Uriarte (BMC Bioinform., 2007)

Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite. - Ramón Díaz-Uriarte; Andreu Alibés; Edward R. Morrissey; Andrés Cañada; Oscar M. Rueda; Mariana L. Neves (Nucleic Acids Res., 2007)

Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH. - Oscar M. Rueda; Ramón Díaz-Uriarte (PLoS Comput. Biol., 2007)

RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions. - Oscar M. Rueda; Ramón Díaz-Uriarte (Bioinform., 2009)

Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously. - Oscar M. Rueda; Ramón Díaz-Uriarte (BMC Bioinform., 2009)

waviCGH: a web application for the analysis and visualization of genomic copy number alterations. - Angel Carro; Daniel Rico; Oscar M. Rueda; Ramón Díaz-Uriarte; David G. Pisano (Nucleic Acids Res., 2010)

Penalized regression elucidates aberration hotspots mediating subtype-specific transcriptional responses in breast cancer. - Yinyin Yuan; Oscar M. Rueda; Christina Curtis; Florian Markowetz (Bioinform., 2011)

Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling. - Erhan Bilal; Janusz Dutkowski; Justin Guinney; In Sock Jang; Benjamin A. Logsdon; Gaurav Pandey 002; Benjamin A. Sauerwine; Yishai Shimoni; Hans Kristian Moen Vollan; Brigham H. Mecham; Oscar M. Rueda; Jorg Tost; et al. (PLoS Comput. Biol., 2013)

Dynamics of breast-cancer relapse reveal late-recurring ER-positive genomic subgroups. - Oscar M. Rueda; Stephen John Sammut; José A. Seoane; Suet-Feung Chin; Jennifer L. Caswell-Jin; Maurizio Callari; Rajbir Nath Batra; Bernard Pereira; Alejandra Bruna; H. Raza Ali; Elena Provenzano; Bin Liu; et al. (Nat., 2019)