Accurate Detection of Recombinant Breakpoints in Whole-Genome Alignments. - Oscar Westesson; Ian H. Holmes (PLoS Comput. Biol., 2009)

HandAlign: Bayesian multiple sequence alignment, phylogeny and ancestral reconstruction. - Oscar Westesson; Lars Barquist; Ian H. Holmes (Bioinform., 2012)

Visualizing next-generation sequencing data with JBrowse. - Oscar Westesson; Mitchell Skinner; Ian H. Holmes (Briefings Bioinform., 2013)