rMSI: an R package for MS imaging data handling and visualization. - Pere Ràfols; Sonia Torres; Noelia Ramírez; Esteban del Castillo; Oscar Yanes; Jesús Brezmes; Xavier Correig (Bioinform., 2017)

FELLA: an R package to enrich metabolomics data. - Sergio Picart-Armada; Francesc Fernández-Albert; Maria Vinaixa; Oscar Yanes; Alexandre Perera-Lluna (BMC Bioinform., 2018)

CliqueMS: a computational tool for annotating in-source metabolite ions from LC-MS untargeted metabolomics data based on a coelution similarity network. - Oriol Senan; Antoni Aguilar-Mogas; Miriam Navarro; Jordi Capellades; Luke Noon; Deborah Burks; Oscar Yanes; Roger Guimerà; Marta Sales-Pardo (Bioinform., 2019)

rMSIproc: an R package for mass spectrometry imaging data processing. - Pere Ràfols; Bram Heijs; Esteban del Castillo; Oscar Yanes; Liam A. McDonnell; Jesús Brezmes; Iara Pérez-Taboada; Mario Vallejo; María García-Altares; Xavier Correig (Bioinform., 2020)

SingleFrag: a deep learning tool for MS/MS fragment and spectral prediction and metabolite annotation. - Maribel Pérez-Ribera; Muhammad Faizan-Khan; Roger Giné; Josep M. Badia; Alexandra Junza; Oscar Yanes; Marta Sales-Pardo; Roger Guimerà (Briefings Bioinform., 2025)