EVA: evaluation of protein structure prediction servers. - Ingrid Y. Y. Koh; Volker A. Eyrich; Marc A. Martí-Renom; Dariusz Przybylski; Mallur S. Madhusudhan; Narayanan Eswar; Osvaldo Graña; Florencio Pazos; Alfonso Valencia; Andrej Sali; Burkhard Rost (Nucleic Acids Res., 2003)

SQUARE-determining reliable regions in sequence alignments. - Michael L. Tress; Osvaldo Graña; Alfonso Valencia (Bioinform., 2004)

EVAcon: a protein contact prediction evaluation service. - Osvaldo Graña; Volker A. Eyrich; Florencio Pazos; Burkhard Rost; Alfonso Valencia (Nucleic Acids Res., 2005)

Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories. - Manuel J. Gómez; Ramón Alonso-Allende; Florencio Pazos; Osvaldo Graña; David de Juan; Alfonso Valencia (Trans. Comp. Sys. Biology, 2005)

Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments. - Daniel Glez-Peña; Osvaldo Graña; Florentino Fdez-Riverola; David G. Pisano (PACBB, 2011)

A New Bioinformatic Pipeline to Address the Most Common Requirements in RNA-seq Data Analysis. - Osvaldo Graña; Miriam Rubio-Camarillo; Florentino Fdez-Riverola; David G. Pisano; Daniel Glez-Peña (PACBB, 2015)

Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data. - Osvaldo Graña; Hugo López-Fernández; Florentino Fdez-Riverola; David G. Pisano; Daniel Glez-Peña (Bioinform., 2018)

Proposal of a New Bioinformatics Pipeline for Metataxonomics in Precision Medicine. - Osvaldo Graña-Castro; Hugo López-Fernández; Florentino Fdez-Riverola; Fátima Al-Shahrour; Daniel Glez-Peña (PACBB, 2019)

Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines. - Alba Nogueira-Rodríguez; Hugo López-Fernández; Osvaldo Graña-Castro; Miguel Reboiro-Jato; Daniel Glez-Peña (PACBB, 2020)

Compi: a framework for portable and reproducible pipelines. - Hugo López-Fernández; Osvaldo Graña-Castro; Alba Nogueira-Rodríguez; Miguel Reboiro-Jato; Daniel Glez-Peña (PeerJ Comput. Sci., 2021)

Pseudoalignment tools as an efficient alternative to detect repeated transposable elements in scRNAseq data. - Jaime Martínez de Villarreal; Mark Kalisz; Gabriel Piedrafita; Osvaldo Graña-Castro; Dafni Chondronasiou; Manuel Serrano; Francisco X. Real (Bioinform., 2023)