Multiple Sequence Alignment System for Pyrosequencing Reads. - Fahad Saeed; Ashfaq A. Khokhar; Osvaldo Zagordi; Niko Beerenwinkel (BICoB, 2009)

Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error Correction. - Osvaldo Zagordi; Lukas Geyrhofer; Volker Roth 001; Niko Beerenwinkel (J. Comput. Biol., 2010)

ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data. - Osvaldo Zagordi; Arnab Bhattacharya 003; Nicholas Eriksson; Niko Beerenwinkel (BMC Bioinform., 2011)

Probabilistic Inference of Viral Quasispecies Subject to Recombination. - Armin Töpfer; Osvaldo Zagordi; Sandhya Prabhakaran; Volker Roth 001; Eran Halperin; Niko Beerenwinkel (J. Comput. Biol., 2013)

HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model. - Sandhya Prabhakaran; Mélanie Rey; Osvaldo Zagordi; Niko Beerenwinkel; Volker Roth 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)