Arrhythmia Detection using Mutual Information-Based Integration Method. - Othman Soufan; Samer Arafat (CoRR, 2015)

DASPfind: new efficient method to predict drug-target interactions. - Wail Ba-alawi; Othman Soufan; Magbubah Essack; Panos Kalnis; Vladimir B. Bajic (J. Cheminformatics, 2016)

DRABAL: novel method to mine large high-throughput screening assays using Bayesian active learning. - Othman Soufan; Wail Ba-alawi; Moataz Afeef; Magbubah Essack; Panos Kalnis; Vladimir B. Bajic (J. Cheminformatics, 2016)

Novel Data Mining Methods for Virtual Screening of Biological Active Chemical Compounds. - Othman Soufan (2016)

DANNP: an efficient artificial neural network pruning tool. - Mona Alshahrani; Othman Soufan; Arturo Magana-Mora; Vladimir B. Bajic (PeerJ Comput. Sci., 2017)

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis. - Jasmine Chong; Othman Soufan; Carin Li; Iurie Caraus; Shuzhao Li; Guillaume Bourque; David S. Wishart; Jianguo Xia (Nucleic Acids Res., 2018)

Systematic selection of chemical fingerprint features improves the Gibbs energy prediction of biochemical reactions. - Meshari Alazmi; Hiroyuki Kuwahara; Othman Soufan; Lizhong Ding 001; Xin Gao 001 (Bioinform., 2019)

NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis. - Guangyan Zhou; Othman Soufan; Jessica Ewald; Robert E. W. Hancock; Niladri Basu; Jianguo Xia (Nucleic Acids Res., 2019)

miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology. - Le Chang; Guangyan Zhou; Othman Soufan; Jianguo Xia (Nucleic Acids Res., 2020)

Discovering Missing Edges in Drug-Protein Networks: Repurposing Drugs for SARS-CoV-2. - Fatemeh ZareMehrjardi; Athar Omidi; Cristina Sciortino; Ryan E. R. Reid; Ryan Lukeman; James Alexander Hughes; Othman Soufan (CIBCB, 2021)

FastBMD: an online tool for rapid benchmark dose-response analysis of transcriptomics data. - Jessica Ewald; Othman Soufan; Jianguo Xia; Niladri Basu (Bioinform., 2021)

Temporally Adjustable Longitudinal Fluid-Attenuated Inversion Recovery MRI Estimation / Synthesis for Multiple Sclerosis. - Jueqi Wang; Derek Berger; Erin L. Mazerolle; Othman Soufan; Jacob Levman (BrainLes@MICCAI, 2022)