Théorèmes limites pour les processus de Markov à sauts. - Ovidiu Radulescu; Aurélie Muller; Alina Crudu (Tech. Sci. Informatiques, 2007)

Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets. - Carito Guziolowski; Jeremy Gruel; Ovidiu Radulescu; Anne Siegel (CIBB, 2008)

Inferring the role of transcription factors in regulatory networks. - Philippe Veber; Carito Guziolowski; Michel Le Borgne; Ovidiu Radulescu; Anne Siegel (BMC Bioinform., 2008)

Robust simplifications of multiscale biochemical networks. - Ovidiu Radulescu; Alexander N. Gorban; Andrei Yu. Zinovyev; Alain Lilienbaum (BMC Syst. Biol., 2008)

Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks. - Sylvain Blachon; Gautier Stoll; Carito Guziolowski; Andrei Yu. Zinovyev; Emmanuel Barillot; Anne Siegel; Ovidiu Radulescu (AIAI (Workshops), 2009)

Hybrid stochastic simplifications for multiscale gene networks. - Alina Crudu; Arnaud Debussche; Ovidiu Radulescu (BMC Syst. Biol., 2009)

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors. - Manu; Svetlana Surkova; Alexander V. Spirov; Vitaly V. Gursky; Hilde Janssens; Ah-Ram Kim; Ovidiu Radulescu; Carlos E. Vanario-Alonso; David H. Sharp; Maria Samsonova; John Reinitz (PLoS Comput. Biol., 2009)

Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network. - Tatiana Baumuratova; Didier Surdez; Bernard Delyon; Gautier Stoll; Olivier Delattre; Ovidiu Radulescu; Anne Siegel (BMC Syst. Biol., 2010)

Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application to Eukaryotic Cell Cycle Regulation. - Vincent Noel; Sergei Vakulenko; Ovidiu Radulescu (WABI, 2011)

Tropical Geometries and Dynamics of Biochemical Networks Application to Hybrid Cell Cycle Models. - Vincent Noel; Dima Grigoriev; Sergei Vakulenko; Ovidiu Radulescu (SASB, 2011)

Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling. - Carito Guziolowski; Sylvain Blachon; Tatiana Baumuratova; Gautier Stoll; Ovidiu Radulescu; Anne Siegel (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Genetically Regulated Metabolic Networks: Gale-Nikaido Modules and Differential Inequalities. - Ovidiu Radulescu; Anne Siegel; Elisabeth Pécou; Clément Chatelain 001; Sandrine Lagarrigue (Trans. Comp. Sys. Biology, 2011)

Hybrid models of the cell cycle molecular machinery - Vincent Noel; Dima Grigoriev; Sergei Vakulenko; Ovidiu Radulescu (HSB, 2012)

Flexible and Robust Patterning by Centralized Gene Networks. - Sergei Vakulenko; Ovidiu Radulescu (Fundam. Informaticae, 2012)

Flexible and Robust Networks. - Sergei Vakulenko; Ovidiu Radulescu (J. Bioinform. Comput. Biol., 2012)

Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi unravels crucial steps and relative importance of multiple pathways. - Partho Sen; Henri J. Vial; Ovidiu Radulescu (BMC Syst. Biol., 2013)

A hybrid mammalian cell cycle model. - Vincent Noël; Sergey Vakulenko; Ovidiu Radulescu (HSB, 2013)

A constraint solving approach to model reduction by tropical equilibration. - Sylvain Soliman; François Fages; Ovidiu Radulescu (Algorithms Mol. Biol., 2014)

Analysis of Reaction Network Systems Using Tropical Geometry. - Satya Swarup Samal; Dima Grigoriev; Holger Fröhlich; Ovidiu Radulescu (CASC, 2015)

Symbolic Dynamics of Biochemical Pathways as Finite States Machines. - Ovidiu Radulescu; Satya Swarup Samal; Aurélien Naldi; Dima Grigoriev; Andreas Weber 004 (CMSB, 2015)

Hybrid Reductions of Computational Models of Ion Channels Coupled to Cellular Biochemistry. - Jasha Sommer-Simpson; John Reinitz; Leonid Fridlyand; Louis Philipson; Ovidiu Radulescu (CMSB, 2016)

Geometric analysis of pathways dynamics: Application to versatility of TGF-β receptors. - Satya Swarup Samal; Aurélien Naldi; Dima Grigoriev; Andreas Weber 004; Nathalie Théret; Ovidiu Radulescu (Biosyst., 2016)

Symbolic Versus Numerical Computation and Visualization of Parameter Regions for Multistationarity of Biological Networks. - Matthew England 001; Hassan Errami; Dima Grigoriev; Ovidiu Radulescu; Thomas Sturm 001; Andreas Weber 004 (CASC, 2017)

A Case Study on the Parametric Occurrence of Multiple Steady States. - Russell J. Bradford; James H. Davenport; Matthew England 001; Hassan Errami; Vladimir P. Gerdt; Dima Grigoriev; Charles Tapley Hoyt; Marek Kosta; Ovidiu Radulescu; Thomas Sturm 001; Andreas Weber 004 (ISSAC, 2017)

Linking metabolic network features to phenotypes using sparse group lasso. - Satya Swarup Samal; Ovidiu Radulescu; Andreas Weber 004; Holger Fröhlich (Bioinform., 2017)

Far-From-Equilibrium Time Evolution between Two Gamma Distributions. - Eun-Jin Kim; Lucille-Marie Tenkès; Rainer Hollerbach; Ovidiu Radulescu (Entropy, 2017)

Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells. - Aurélien Naldi; Romain M. Larive; Urszula Czerwinska; Serge Urbach; Philippe Montcourrier; Christian Roy; Jérôme Solassol; Gilles Freiss; Peter J. Coopman; Ovidiu Radulescu (PLoS Comput. Biol., 2017)

Centralized Networks to Generate Human Body Motions. - Sergei Vakulenko; Ovidiu Radulescu; Ivan Morozov; Andreas Weber 004 (Sensors, 2017)

The SYMBIONT project: symbolic methods for biological networks. - François Boulier; François Fages; Ovidiu Radulescu; Satya Swarup Samal; Andreas Schuppert; Werner M. Seiler; Thomas Sturm 001; Sebastian Walcher; Andreas Weber 004 (ACM Commun. Comput. Algebra, 2018)

Effective Computational Methods for Hybrid Stochastic Gene Networks. - Guilherme C. P. Innocentini; Fernando Antoneli; Arran Hodgkinson; Ovidiu Radulescu (CMSB, 2019)

An in silico analysis of robust but fragile gene regulation links enhancer length to robustness. - Kenneth Barr; John Reinitz; Ovidiu Radulescu (PLoS Comput. Biol., 2019)

Metastable Regimes and Tipping Points of Biochemical Networks with Potential Applications in Precision Medicine. - Satya Swarup Samal; Jeyashree Krishnan; Ali Hadizadeh Esfahani; Christoph Lüders; Andreas Weber 004; Ovidiu Radulescu (Automated Reasoning for Systems Biology and Medicine, 2019)

Tropical Geometry of Biological Systems (Invited Talk). - Ovidiu Radulescu (CASC, 2020)

A Linear Algebra Approach for Detecting Binomiality of Steady State Ideals of Reversible Chemical Reaction Networks. - Hamid Rahkooy; Ovidiu Radulescu; Thomas Sturm 001 (CASC, 2020)

Interval Constraint Satisfaction and Optimization for Biological Homeostasis and Multistationarity. - Aurélien Desoeuvres; Gilles Trombettoni; Ovidiu Radulescu (CMSB, 2020)

Identifying the parametric occurrence of multiple steady states for some biological networks. - Russell J. Bradford; James H. Davenport; Matthew England 001; Hassan Errami; Vladimir P. Gerdt; Dima Grigoriev; Charles Tapley Hoyt; Marek Kosta; Ovidiu Radulescu; Thomas Sturm 001; Andreas Weber 004 (J. Symb. Comput., 2020)

LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales. - Marion Buffard; Aurélien Desoeuvres; Aurélien Naldi; Clément Requilé; Andrei Yu. Zinovyev; Ovidiu Radulescu (CMSB, 2021)

Algorithmic Reduction of Biological Networks with Multiple Time Scales. - Niclas Kruff; Christoph Lüders; Ovidiu Radulescu; Thomas Sturm 001; Sebastian Walcher (Math. Comput. Sci., 2021)

Push-forward method for piecewise deterministic biochemical simulations. - Guilherme C. P. Innocentini; Arran Hodgkinson; Fernando Antoneli; Arnaud Debussche; Ovidiu Radulescu (Theor. Comput. Sci., 2021)

Qualitative Dynamics of Chemical Reaction Networks: An Investigation Using Partial Tropical Equilibrations. - Aurélien Desoeuvres; Peter Szmolyan; Ovidiu Radulescu (CMSB, 2022)

ODEbase: A Repository of ODE Systems for Systems Biology. - Christoph Lüders; Thomas Sturm 001; Ovidiu Radulescu (CoRR, 2022)

Efficient 3D reconstruction of whole slide images in melanoma. - J. Arslan; Mehdi Ounissi; H. Luo; M. Lacroix; P. Dupré; P. Kumar; Arran Hodgkinson; S. Dandou; Romain M. Larive; C. Pignodel; L. Le Cam; Ovidiu Radulescu; et al. (Digital and Computational Pathology, 2023)

Mathematical basis and toolchain for hierarchical optimization of biochemical networks. - Nisha A. Viswan; Alexandre Tribut; Manvel Gasparyan; Ovidiu Radulescu; Upinder S. Bhalla (PLoS Comput. Biol., 2024)

A skin microbiome model with AMP interactions and analysis of quasi-stability vs stability in population dynamics. - Eléa Thibault Greugny; François Fages; Ovidiu Radulescu; Peter Szmolyan; Georgios N. Stamatas (Theor. Comput. Sci., 2024)

Reduction of Chemical Reaction Networks with Approximate Conservation Laws. - Aurélien Desoeuvres; Alexandru Iosif; Christoph Lüders; Ovidiu Radulescu; Hamid Rahkooy; Matthias Seiß; Thomas Sturm 001 (SIAM J. Appl. Dyn. Syst., 2024)

A Computational Approach to Polynomial Conservation Laws. - Aurélien Desoeuvres; Alexandru Iosif; Christoph Lüders; Ovidiu Radulescu; Hamid Rahkooy; Matthias Seiß; Thomas Sturm 001 (SIAM J. Appl. Dyn. Syst., 2024)

Open and Sustainable AI: challenges, opportunities and the road ahead in the life sciences. - Gavin Farrell; Eleni Adamidi; Rafael Andrade Buono; Mihail Anton; Omar Abdelghani Attafi; Salvador Capella-Gutiérrez; Emidio Capriotti; Leyla Jael Castro; Davide Cirillo; Lisa C. Crossman; Christophe Dessimoz; Alexandros C. Dimopoulos; et al. (CoRR, 2025)