SUPERFAMILY 1.75 including a domain-centric gene ontology method. - David A. de Lima Morais; Hai Fang; Owen J. L. Rackham; Derek Wilson; Ralph Pethica; Cyrus Chothia; Julian Gough (Nucleic Acids Res., 2011)

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains. - Tony E. Lewis; Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Cyrus Chothia; Alison L. Cuff; Jose M. Dana; Ioannis Filippis; Julian Gough; Sarah Hunter; David T. Jones; et al. (Nucleic Acids Res., 2013)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)

WGBSSuite: simulating whole-genome bisulphite sequencing data and benchmarking differential DNA methylation analysis tools. - Owen J. L. Rackham; Petros Dellaportas; Enrico Petretto; Leonardo Bottolo (Bioinform., 2015)

Genome3D: exploiting structure to help users understand their sequences. - Tony E. Lewis; Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Cyrus Chothia; Domenico Cozzetto; Jose M. Dana; Ioannis Filippis; Julian Gough; David T. Jones; Lawrence A. Kelley; et al. (Nucleic Acids Res., 2015)

The SUPERFAMILY 1.75 database in 2014: a doubling of data. - Matt E. Oates; Jonathan Stahlhacke; Dimitrios V. Vavoulis; Ben Smithers; Owen J. L. Rackham; Adam J. Sardar; Jan Zaucha; Natalie Thurlby; Hai Fang; Julian Gough (Nucleic Acids Res., 2015)

Web-based Gene Pathogenicity Analysis (WGPA): a web platform to interpret gene pathogenicity from personal genome data. - Juan J. Diaz-Montana; Owen J. L. Rackham; Norberto Díaz-Díaz; Enrico Petretto (Bioinform., 2016)

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. - Marina Lizio; Jayson Harshbarger; Imad Abugessaisa; Shuei Noguchi; Atsushi Kondo; Jessica Severin; Chris Mungall; David J. Arenillas; Anthony Mathelier; Yulia A. Medvedeva; Andreas Lennartsson; Finn Drabløs; et al. (Nucleic Acids Res., 2017)

GeneSwitches: ordering gene expression and functional events in single-cell experiments. - Elaine Y. Cao; John F. Ouyang; Owen J. L. Rackham (Bioinform., 2020)

ShinyCell: simple and sharable visualization of single-cell gene expression data. - John F. Ouyang; Uma S. Kamaraj; Elaine Y. Cao; Owen J. L. Rackham (Bioinform., 2021)

CLIPreg: constructing translational regulatory networks from CLIP-, Ribo- and RNA-seq. - Baptiste Kerouanton; Sebastian Schäfer; Lena Ho; Sonia Chothani; Owen J. L. Rackham (Bioinform., 2022)

Mask prior-guided denoising diffusion improves inverse protein folding. - Peizhen Bai; Filip Miljkovic; Xianyuan Liu; Leonardo De Maria; Rebecca Croasdale-Wood; Owen J. L. Rackham; Haiping Lu (CoRR, 2024)