TIGRFAMs: a protein family resource for the functional identification of proteins. - Daniel H. Haft; Brendan J. Loftus; Delwood L. Richardson; Fan Yang; Jonathan A. Eisen; Ian T. Paulsen; Owen White (Nucleic Acids Res., 2001)

The Comprehensive Microbial Resource. - Jeremy D. Peterson; Lowell A. Umayam; Tanja Dickinson; Erin K. Hickey; Owen White (Nucleic Acids Res., 2001)

Bacterial Annotation Tools. - Owen White (German Conference on Bioinformatics, 2003)

The TIGRFAMs database of protein families. - Daniel H. Haft; Jeremy D. Selengut; Owen White (Nucleic Acids Res., 2003)

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics. - Daniel H. Haft; Jeremy D. Selengut; Lauren M. Brinkac; Nikhat Zafar; Owen White (Bioinform., 2005)

Gemina: A Web-Based Epidemiology and Genomic Metadata System Designed to Identify Infectious Agents. - Lynn M. Schriml; Aaron Gussman; Kathy Phillippy; Samuel V. Angiuoli; Kumar Hari; Alan Goates; Ravi Jain; Tanja Davidsen; Anurhada Ganapathy; Elodie Ghedin; Steven Salzberg; Owen White; et al. (BioSurveillance, 2007)

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. - Jeremy D. Selengut; Daniel H. Haft; Tanja Davidsen; Anurhada Ganapathy; Michelle Gwinn-Giglio; William C. Nelson; Alexander R. Richter; Owen White (Nucleic Acids Res., 2007)

Ergatis: a web interface and scalable software system for bioinformatics workflows. - Joshua Orvis; Jonathan Crabtree; Kevin Galens; Aaron Gussman; Jason M. Inman; Eduardo Lee; Sreenath Nampally; David R. Riley 002; Jaideep P. Sundaram; Victor Felix; Brett Whitty; Anup Mahurkar; et al. (Bioinform., 2010)

Pathema: a clade-specific bioinformatics resource center for pathogen research. - Lauren M. Brinkac; Tanja Davidsen; Erin Beck; Anuradha Ganapathy; Elisabet Caler; Robert J. Dodson; A. Scott Durkin; Derek M. Harkins; Hernan Lorenzi; Ramana Madupu; Yinong Sebastian; Susmita Shrivastava; et al. (Nucleic Acids Res., 2010)

The comprehensive microbial resource. - Tanja Davidsen; Erin Beck; Anuradha Ganapathy; Robert Montgomery; Nikhat Zafar; Qi Yang; Ramana Madupu; Phil Goetz; Kevin Galinsky; Owen White; Granger G. Sutton (Nucleic Acids Res., 2010)

GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database. - Lynn M. Schriml; Cesar Arze; Suvarna Nadendla; Anurhada Ganapathy; Victor Felix; Anup Mahurkar; Katherine H. Phillippy; Aaron Gussman; Samuel V. Angiuoli; Elodie Ghedin; Owen White; Neil Hall (Nucleic Acids Res., 2010)

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing. - Samuel V. Angiuoli; Malcolm Matalka; Aaron Gussman; Kevin Galens; Mahesh Vangala; David R. Riley 002; Cesar Arze; James Robert White; Owen White; W. Florian Fricke (BMC Bioinform., 2011)

Towards BioDBcore: a community-defined information specification for biological databases. - Pascale Gaudet; Amos Bairoch; Dawn Field; Susanna-Assunta Sansone; Chris F. Taylor; Teresa K. Attwood; Alex Bateman; Judith A. Blake; Carol J. Bult; J. Michael Cherry; Rex L. Chisholm; Guy Cochrane; et al. (Nucleic Acids Res., 2011)

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome. - Sahar Abubucker; Nicola Segata; Johannes Goll; Alyxandria M. Schubert; Jacques Izard; Brandi L. Cantarel; Beltran Rodriguez-Mueller; Jeremy Zucker; Mathangi Thiagarajan; Bernard Henrissat; Owen White; Scott T. Kelley; et al. (PLoS Comput. Biol., 2012)

Standardized description of scientific evidence using the Evidence Ontology (ECO). - Marcus C. Chibucos; Christopher J. Mungall; Rama Balakrishnan; Karen R. Christie; Rachael P. Huntley; Owen White; Judith A. Blake; Suzanna E. Lewis; Michelle G. Giglio (Database J. Biol. Databases Curation, 2014)

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG. - Jonathan Crabtree; Sonia Agrawal; Anup Mahurkar; Garry S. A. Myers; David A. Rasko; Owen White (Bioinform., 2014)

MetaRef: a pan-genomic database for comparative and community microbial genomics. - Katherine Huang; Arthur Brady; Anup Mahurkar; Owen White; Dirk Gevers; Curtis Huttenhower; Nicola Segata (Nucleic Acids Res., 2014)

HMPDACC: a Human Microbiome Project Multi-omic data resource. - Heather Huot Creasy; Victor Felix; Jain Aluvathingal; Jonathan Crabtree; Olukemi O. Ifeonu; James Matsumura; Carrie McCracken; Lance Nickel; Joshua Orvis; Mike Schor; Michelle G. Giglio; Anup Mahurkar; et al. (Nucleic Acids Res., 2021)

Data Harmonization through Use of Community Standards in the Common Fund Data Ecosystem. - Michelle G. Giglio; Suvarna Nadendla; Arthur Brady; Amanda Charbonneau; Karl Czajkowski; Jeremy Yang; Tom Gillespie; Philippe Rocca-Serra; Jeffrey S. Grethe; Raja Mazumder; Bernard de Bono; Jonathan C. Silverstein; et al. (ICBO, 2022)

The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. - Seth A. Ament; Ricky S. Adkins; Robert Carter; Elena Chrysostomou; Carlo Colantuoni; Jonathan Crabtree; Heather Huot Creasy; Kylee Degatano; Victor Felix; Peter Gandt; Gwenn a Garden; Michelle G. Giglio; et al. (Nucleic Acids Res., 2023)