Oya Beyan

According to our database, Oya Beyan authored at least 58 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

FDO Manager: Minimum Viable FAIR Digital Object Implementation.

Oussama Zoubia, Zeyd Boukhers, Nagaraj Bahubali Asundi, Sezin Dogan, Adamantios Koumpis, Christoph Lange, Oya Beyan

CoRR, 2024

2023

Transparency in Medical Artificial Intelligence Systems.

Lars Quakulinski, Adamantios Koumpis, Oya Deniz Beyan

Int. J. Semantic Comput., December, 2023

Performance and limitations of a supervised deep learning approach for the histopathological Oxford Classification of glomeruli with IgA nephropathy.

Nicola Altini, Michele Rossini, Sándor Turkevi-Nagy, Francesco Pesce, Paola Pontrelli, Berardino Prencipe, Francesco Berloco, Surya Seshan, Jean-Baptiste Gibier, Aníbal Pedraza Dorado, Gloria Bueno, Licia Peruzzi, Mattia Rossi, Albino Eccher, Feifei Li, Adamantios Koumpis, Oya Beyan, Jonathan Barratt, Huy Quoc Vo, Chandra Mohan, Hien Van Nguyen, Pietro Antonio Cicalese, Angela Ernst, Loreto Gesualdo, Vitoantonio Bevilacqua, Jan Ulrich Becker

Comput. Methods Programs Biomed., December, 2023

Explainable AI for Bioinformatics: Methods, Tools and Applications.

Md. Rezaul Karim, Tanhim Islam, Md Shajalal, Oya Beyan, Christoph Lange, Michael Cochez, Dietrich Rebholz-Schuhmann, Stefan Decker

Briefings Bioinform., September, 2023

From Large Language Models to Knowledge Graphs for Biomarker Discovery in Cancer.

Md. Rezaul Karim, Lina Molinas Comet, Md Shajalal, Oya Beyan, Dietrich Rebholz-Schuhmann, Stefan Decker

CoRR, 2023

Privacy-Preserving Linkage of Distributed Datasets using the Personal Health Train.

Maximilian Jugl, Sascha Welten, Yongli Mou, Yeliz Ucer Yediel, Oya Deniz Beyan, Ulrich Sax, Toralf Kirsten

CoRR, 2023

PADME-SoSci: A Platform for Analytics and Distributed Machine Learning for the Social Sciences.

Zeyd Boukhers, Arnim Bleier, Yeliz Ucer Yediel, Mio Hienstorfer-Heitmann, Mehrshad Jaberansary, Adamantios Koumpis, Oya Beyan

CoRR, 2023

A Biomedical Knowledge Graph for Biomarker Discovery in Cancer.

Md. Rezaul Karim, Lina Molinas Comet, Oya Beyan, Dietrich Rebholz-Schuhmann, Stefan Decker

CoRR, 2023

Analyzing Distributed Medical Data in FAIR Data Spaces.

Mehrshad Jaberansary, Macedo Maia, Yeliz Ucer Yediel, Oya Beyan, Toralf Kirsten

Proceedings of the Companion Proceedings of the ACM Web Conference 2023, 2023

Enhancing Data Space Semantic Interoperability through Machine Learning: a Visionary Perspective.

Zeyd Boukhers, Christoph Lange, Oya Beyan

Proceedings of the Companion Proceedings of the ACM Web Conference 2023, 2023

pFedV: Mitigating Feature Distribution Skewness via Personalized Federated Learning with Variational Distribution Constraints.

Yongli Mou, Jiahui Geng, Feng Zhou, Oya Beyan, Chunming Rong, Stefan Decker

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2023

Voxel-Wise Medical Imaging Transformation and Adaption Based on CycleGAN and Score-Based Diffusion.

Feifei Li, Mirjam Schöneck, Oya Beyan, Liliana Lourenco Caldeira

Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

Integrating Cross-Departmental Data.

Julia Gehrmann, Oya Beyan

Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

Breaking Barriers for Interoperability: A Reference Implementation of CSV-FHIR Transformation Using Open-Source Tools.

Samer Alkarkoukly, Md. Mostafa Kamal, Oya Beyan

Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

The Library of Babel as a Digital Library of Human Mistakes.

Lars Quakulinski, Adamantios Koumpis, Oya Deniz Beyan

Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2023

PADME-SoSci: A Platform for Analytics and Distributed Machine Learning for the Social Sciences.

Zeyd Boukhers, Arnim Bleier, Yeliz Ucer Yediel, Mio Hienstorfer-Heitmann, Mehrshad Jaberansary, Sascha Welten, Adamantios Koumpis, Oya Beyan

Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2023

Towards FAIR Data in Distributed Machine Learning Systems.

Yongli Mou, Fengyang Guo, Wei Lu, Yongzhao Li, Oya Beyan, Thomas Rose, Schahram Dustdar, Stefan Decker

Proceedings of the IEEE Global Communications Conference, 2023

Distributed Privacy-Preserving Data Analysis in NFDI4Health With the Personal Health Train.

Yongli Mou, Feifei Li, Sven Weber, Sabith Haneef, Hans Meine, Liliana Caldeira, Mehrshad Jaberansary, Sascha Welten, Yeliz Ucer Yediel, Guido P. M. Prause, Stefan Decker, Oya Beyan, Toralf Kirsten

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

2022

Convolutional Embedded Networks for Population Scale Clustering and Bio-Ancestry Inferencing.

Md. Rezaul Karim, Michael Cochez, Achille Zappa, Ratnesh Sahay, Dietrich Rebholz-Schuhmann, Oya Beyan, Stefan Decker

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Explainable AI for Bioinformatics: Methods, Tools, and Applications.

Md. Rezaul Karim, Tanhim Islam, Oya Beyan, Christoph Lange, Michael Cochez, Dietrich Rebholz-Schuhmann, Stefan Decker

CoRR, 2022

Establishing Transparency in Artificial Intelligence Systems.

Lars Quakulinski, Adamantios Koumpis, Oya Deniz Beyan

Proceedings of the Fourth International Conference on Transdisciplinary AI, 2022

2021

DAMS: A Distributed Analytics Metadata Schema.

Sascha Welten, Laurenz Neumann, Yeliz Ucer Yediel, Luiz Olavo Bonino da Silva Santos, Stefan Decker, Oya Beyan

Data Intell., 2021

Towards General Deep Leakage in Federated Learning.

Jiahui Geng, Yongli Mou, Feifei Li, Qing Li, Oya Beyan, Stefan Decker, Chunming Rong

CoRR, 2021

Distributed Learning for Melanoma Classification using Personal Health Train.

Yongli Mou, Sascha Welten, Yeliz Ucer Yediel, Toralf Kirsten, Oya Deniz Beyan

CoRR, 2021

Deep learning-based clustering approaches for bioinformatics.

Md. Rezaul Karim, Oya Beyan, Achille Zappa, Ivan G. Costa, Dietrich Rebholz-Schuhmann, Michael Cochez, Stefan Decker

Briefings Bioinform., 2021

DeepKneeExplainer: Explainable Knee Osteoarthritis Diagnosis From Radiographs and Magnetic Resonance Imaging.

Md. Rezaul Karim, Jiao Jiao, Till Döhmen, Michael Cochez, Oya Beyan, Dietrich Rebholz-Schuhmann, Stefan Decker

IEEE Access, 2021

Optimized Federated Learning on Class-Biased Distributed Data Sources.

Yongli Mou, Jiahui Geng, Sascha Welten, Chunming Rong, Stefan Decker, Oya Beyan

Proceedings of the Machine Learning and Principles and Practice of Knowledge Discovery in Databases, 2021

Distributed Skin Lesion Analysis Across Decentralised Data Sources.

Yongli Mou, Sascha Welten, Mehrshad Jaberansary, Yeliz Ucer Yediel, Toralf Kirsten, Stefan Decker, Oya Beyan

Proceedings of the Public Health and Informatics, 2021

FAIRness for FHIR: Towards Making Health Datasets FAIR Using HL7 FHIR.

Alicia Martinez-García, Giorgio Cangioli, Catherine Chronaki, Matthias Löbe, Oya Beyan, Anthony Juehne, Carlos Luis Parra Calderón

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

2020

A snapshot neural ensemble method for cancer-type prediction based on copy number variations.

Md. Rezaul Karim, Ashiqur Rahman, Joao Bosco Jares, Stefan Decker, Oya Beyan

Neural Comput. Appl., 2020

Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data.

Peter McQuilton, Dominique Batista, Oya Beyan, Ramón Granell, Simon J. Coles, Massimiliano Izzo, Allyson L. Lister, Robert Pergl, Philippe Rocca-Serra, Ben Schaap, Hugh P. Shanahan, Milo Thurston, Susanna-Assunta Sansone

Data Intell., 2020

Distributed Analytics on Sensitive Medical Data: The Personal Health Train.

Oya Beyan, Ananya Choudhury, Johan van Soest, Oliver Kohlbacher, Lukas Zimmermann, Holger Stenzhorn, Md. Rezaul Karim, Michel Dumontier, Stefan Decker, Luiz Olavo Bonino da Silva Santos, Andre Dekker

Data Intell., 2020

Biases in Data Science Lifecycle.

Dinh-An Ho, Oya Beyan

CoRR, 2020

DeepCOVIDExplainer: Explainable COVID-19 Predictions Based on Chest X-ray Images.

Md. Rezaul Karim, Till Döhmen, Dietrich Rebholz-Schuhmann, Stefan Decker, Michael Cochez, Oya Beyan

CoRR, 2020

Enabling ad-hoc reuse of private data repositories through schema extraction.

Lars Christoph Gleim, Md. Rezaul Karim, Lukas Zimmermann, Oliver Kohlbacher, Holger Stenzhorn, Stefan Decker, Oya Beyan

J. Biomed. Semant., 2020

DeepCOVIDExplainer: Explainable COVID-19 Diagnosis from Chest X-ray Images.

Md. Rezaul Karim, Till Döhmen, Michael Cochez, Oya Beyan, Dietrich Rebholz-Schuhmann, Stefan Decker

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019

Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data.

Md. Rezaul Karim, Galih Wicaksono, Ivan G. Costa, Stefan Decker, Oya Beyan

IEEE Access, 2019

Implementation of Clinical Decision Support Services to Detect Potential Drug-Drug Interaction Using Clinical Quality Language.

Binh-Phi Nguyen, Thomas J. Reese, Stefan Decker, Daniel C. Malone, Richard D. Boyce, Oya Beyan

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Design of Metadata Services for Clinical Data Interoperability in Germany.

Matthias Löbe, Oya Beyan, Sebastian Stäubert, Frank A. Meineke, Danny Ammon, Alfred Winter, Stefan Decker, Markus Löffler, Toralf Kirsten

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

OncoNetExplainer: Explainable Predictions of Cancer Types Based on Gene Expression Data.

Md. Rezaul Karim, Michael Cochez, Oya Beyan, Stefan Decker, Christoph Lange

Proceedings of the 19th IEEE International Conference on Bioinformatics and Bioengineering, 2019

Drug-Drug Interaction Prediction Based on Knowledge Graph Embeddings and Convolutional-LSTM Network.

Md. Rezaul Karim, Michael Cochez, Joao Bosco Jares, Mamtaz Uddin, Oya Beyan, Stefan Decker

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018

Mining maximal frequent patterns in transactional databases and dynamic data streams: A spark-based approach.

Md. Rezaul Karim, Michael Cochez, Oya Deniz Beyan, Chowdhury Farhan Ahmed, Stefan Decker

Inf. Sci., 2018

Recurrent Deep Embedding Networks for Genotype Clustering and Ethnicity Prediction.

Md. Rezaul Karim, Michael Cochez, Oya Beyan, Achille Zappa, Ratnesh Sahay, Stefan Decker, Dietrich Rebholz-Schuhmann

CoRR, 2018

A distributed analytics platform to execute FHIR based phenotyping algorithms.

Md. Rezaul Karim, Binh-Phi Nguyen, Lukas Zimmermann, Toralf Kirsten, Matthias Löbe, Frank A. Meineke, Holger Stenzhorn, Oliver Kohlbacher, Stefan Decker, Oya Beyan

Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018

Research Data in the Fraunhofer Digital Project: Creating a FAIR Research Data Infrastructure and Culture.

Oya Beyan, Andrea Wuchner, Dirk Eisengräber-Pabst, Christoph Quix, Christian Zaschke, Oliver Schumacher

Proceedings of Workshop on Research Objects (RO2018), 2018

2017

Towards a FAIR Sharing of Scientific Experiments: Improving Discoverability and Reusability of Dielectric Measurements of Biological Tissues.

Md. Rezaul Karim, Matthias Heinrichs, Lars Christoph Gleim, Michael Cochez, Emily Porter, Alessandra La Gioia, Saqib Salahuddin, Stefan Decker, Martin O'Halloran, Oya Beyan

Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

2016

A semantic architecture for preserving and interpreting the information contained in Irish historical vital records.

Christophe Debruyne, Oya Deniz Beyan, Rebecca Grant, Sandra Collins, Stefan Decker, Natalie Harrower

Int. J. Digit. Libr., 2016

An RDF Based Semantic Approach to Model Temporal Relations in Health Records.

Oya Beyan, Stefan Decker

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

A Framework for Applying Data Integration and Curation Pipelines to Support Integration of Migrants and Refugees in Europe.

Oya Deniz Beyan, Siegfried Handschuh, Adamantios Koumpis, Garyfallos Fragidis, Stefan Decker

Proceedings of the Collaboration in a Hyperconnected World, 2016

2015

Implementing an ethical approach to big data analytics in assistive robotics for elderly with dementia.

Heike Felzmann, Timur Beyan, Mark Ryan, Oya Beyan

SIGCAS Comput. Soc., 2015

Historical Data Preservation and Interpretation Pipeline for Irish Civil Registration Records.

Oya Beyan, P. J. Mealy, Dolores Grant, Rebecca Grant, Natalie Harrower, Ciara Breathnach, Sandra Collins, Stefan Decker

Proceedings of the On the Move to Meaningful Internet Systems: OTM 2015 Workshops, 2015

On a Linked Data Platform for Irish Historical Vital Records.

Christophe Debruyne, Oya Deniz Beyan, Rebecca Grant, Sandra Collins, Stefan Decker

Proceedings of the Research and Advanced Technology for Digital Libraries, 2015

2014

LinkedPPI: Enabling Intuitive, Integrative Protein-Protein Interaction Discovery.

Laleh Kazemzadeh, Maulik R. Kamdar, Oya Deniz Beyan, Stefan Decker, Frank Barry

Proceedings of the 4th Workshop on Linked Science 2014, 2014

2013

An Ontology for Clinical Trial Data Integration.

Ratnesh Sahay, Dimitrios Ntalaperas, Eleni Kamateri, Panagiotis Hasapis, Oya Deniz Beyan, Marie-Pierre F. Strippoli, Christiana Demetriou, Thomai Gklarou-Stavropoulou, Mathias Brochhausen, Konstantinos A. Tarabanis, Thanassis Bouras, David Tian, Aristos Aristodimou, Athos Antoniades, Christos Georgousopoulos, Manfred Hauswirth, Stefan Decker

Proceedings of the IEEE International Conference on Systems, 2013

Advancing Patient Record Safety and EHR Semantic Interoperability.

Konstantinos Perakis, Thanassis Bouras, Dimitrios Ntalaperas, Panagiotis Hasapis, Christos Georgousopoulos, Ratnesh Sahay, Oya Deniz Beyan, Cristi Potlog, Daniela Usurelu

Proceedings of the IEEE International Conference on Systems, 2013

Querying phenotype-genotype associations across multiple knowledge bases using Semantic Web technologies.

Oya Deniz Beyan, Aftab Iqbal, Yasar Khan, Athos Antoniades, John A. Keane, Panagiotis Hasapis, Christos Georgousopoulos, Myrto Ioannidi, Stefan Decker, Ratnesh Sahay

Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

2012

A Knowledge Based Search Tool for Performance Measures in Health Care Systems.

Oya Deniz Beyan, Nazife Baykal

J. Medical Syst., 2012

2010

A new ontology and knowledge base system for performance measurement in health care ; Sağlık bakımında performans ölçümü için yeni bir ontoloji ve bilgi tabanı sistemi.

Oya Deniz Beyan

PhD thesis, 2010