eBDIMS server: protein transition pathways with ensemble analysis in 2D-motion spaces. - Laura Orellana; Johan Gustavsson; Cathrine Bergh; Ozge Yoluk; Erik Lindahl (Bioinform., 2019)

FFParam: Standalone package for CHARMM additive and Drude polarizable force field parametrization of small molecules. - Anmol Kumar; Ozge Yoluk; Alexander D. MacKerell Jr. (J. Comput. Chem., 2020)