Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. - A. Selim Aytuna; Attila Gürsoy; Ozlem Keskin (Bioinform., 2005)

PRISM: protein interactions by structural matching. - Utkan Ogmen; Ozlem Keskin; A. Selim Aytuna; Ruth Nussinov; Attila Gürsoy (Nucleic Acids Res., 2005)

Structure Prediction of Potato Large Subunit ADP - Glucose Pyrophosphorylase. - Aytug Tuncel; I. Halil Kavakli; Ozlem Keskin (BIOCOMP, 2006)

Principles of Protein Recognition and Properties of Protein-protein Interfaces. - Ozlem Keskin; Attila Gürsoy; Ruth Nussinov (Protein-protein Interactions and Networks, 2008)

HotSprint: database of computational hot spots in protein interfaces. - Emre Guney; Nurcan Tuncbag; Ozlem Keskin; Attila Gürsoy (Nucleic Acids Res., 2008)

A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. - Nurcan Tuncbag; Gozde Kar; Ozlem Keskin; Attila Gürsoy; Ruth Nussinov (Briefings Bioinform., 2009)

Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. - Nurcan Tuncbag; Attila Gürsoy; Ozlem Keskin (Bioinform., 2009)

Investigation of the Interaction between the Large and Small Subunits of Potato ADP-Glucose Pyrophosphorylase. - Ibrahim Baris; Aytug Tuncel; Natali Ozber; Ozlem Keskin; I. Halil Kavakli (PLoS Comput. Biol., 2009)

Human Cancer Protein-Protein Interaction Network: A Structural Perspective. - Gozde Kar; Attila Gürsoy; Ozlem Keskin (PLoS Comput. Biol., 2009)

Interaction prediction and classification of PDZ domains. - Sibel Kalyoncu; Ozlem Keskin; Attila Gürsoy (BMC Bioinform., 2010)

CCRXP: exploring clusters of conserved residues in protein structures. - Shandar Ahmad; Ozlem Keskin; Kenji Mizuguchi; Akinori Sarai; Ruth Nussinov (Nucleic Acids Res., 2010)

HotPoint: hot spot prediction server for protein interfaces. - Nurcan Tuncbag; Ozlem Keskin; Attila Gürsoy (Nucleic Acids Res., 2010)

A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets. - Billur Engin; Ozlem Keskin; Ruth Nussinov; Attila Gürsoy (J. Chem. Inf. Model., 2012)

HotRegion: a database of predicted hot spot clusters. - Engin Cukuroglu; Attila Gürsoy; Ozlem Keskin (Nucleic Acids Res., 2012)

Modeling Structural Protein Interaction Networks for Betweenness Analysis. - Deniz Demircioglu; Ozlem Keskin; Attila Gürsoy (ISCIS, 2014)

PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes. - Alper Baspinar; Engin Cukuroglu; Ruth Nussinov; Ozlem Keskin; Attila Gürsoy (Nucleic Acids Res., 2014)

The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer. - Saliha Ece Acuner Ozbabacan; Attila Gürsoy; Ruth Nussinov; Ozlem Keskin (PLoS Comput. Biol., 2014)

Topological, functional, and structural analyses of protein-protein interaction networks of breast cancer lung and brain metastases. - Farideh Halakou; Attila Gürsoy; Emel Sen Kilic; Ozlem Keskin (CIBCB, 2017)

Analysis of single amino acid variations in singlet hot spots of protein-protein interfaces. - E. Sila Ozdemir; Attila Gürsoy; Ozlem Keskin (Bioinform., 2018)

3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients. - Cansu Dincer; Tugba Turkoglu Kaya; Ozlem Keskin; Attila Gürsoy; Nurcan Tuncbag (PLoS Comput. Biol., 2019)

Identification of potential inhibitors of human methionine aminopeptidase (type II) for cancer therapy: Structure-based virtual screening, ADMET prediction and molecular dynamics studies. - Jackson Weako; Abdullahi Ibrahim Uba; Ozlem Keskin; Attila Gürsoy; Kemal Yelekçi (Comput. Biol. Chem., 2020)

Embedding Alternative Conformations of Proteins in Protein-Protein Interaction Networks. - Farideh Halakou; Attila Gürsoy; Ozlem Keskin (Protein-Protein Interaction Networks, 2020)

SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions. - Damla Ovek; Ameer Taweel; Zeynep Abali; Ece Tezsezen; Yunus Emre Koroglu; Chung-Jung Tsai; Ruth Nussinov; Ozlem Keskin; Attila Gürsoy (Bioinform., 2022)

HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry. - Hansaim Lim; Chung-Jung Tsai; Ozlem Keskin; Ruth Nussinov; Attila Gürsoy (Bioinform., 2022)

The interaction between mutated DYRK1A and APP suggests a potential target for vascular cognitive impairment. - Melisa Ece Zeylan; Attila Gürsoy; Simge Senyuz; Ozlem Keskin (BIBM, 2023)

Structural coverage of the human interactome. - Kayra Kosoglu; Zeynep Aydin; Nurcan Tuncbag; Attila Gürsoy; Ozlem Keskin (Briefings Bioinform., 2024)

DiPPI: A Curated Data Set for Drug-like Molecules in Protein-Protein Interfaces. - Fatma Cankara; Simge Senyuz; Ahenk Zeynep Sayin; Attila Gürsoy; Ozlem Keskin (J. Chem. Inf. Model., 2024)

ProInterVal: Validation of Protein-Protein Interfaces through Learned Interface Representations. - Damla Ovek; Ozlem Keskin; Attila Gürsoy (J. Chem. Inf. Model., 2024)

WireGuard-AES: Hardware based encryption to WireGuard for VPN gateways. - Mehmet Fatih Yuce; Ozlem Keskin; E. Yerlikaya; M. Y. Akmaz; A. Kirca; Derya Yiltas-Kaplan; Mehmet Ali Ertürk; Gulsum Zeynep Gurkas Aydin; Özgür Can Turna 001; M. Talha Buyukakkaslar; Safak Durukan-Odabasi; M. Ali Aydin (SoftwareX, 2025)