Boltzmann Energy-based Image Analysis Demonstrates that Extracellular Domain Size Differences Explain Protein Segregation at Immune Synapses. - Nigel J. Burroughs; Karsten Köhler; Vladimir Miloserdov; Michael L. Dustin; P. Anton van der Merwe; Daniel M. Davis (PLoS Comput. Biol., 2011)

Systems Model of T Cell Receptor Proximal Signaling Reveals Emergent Ultrasensitivity. - Himadri Mukhopadhyay; Shaun-Paul Cordoba; Philip K. Maini; P. Anton van der Merwe; Omer Dushek (PLoS Comput. Biol., 2013)

pyHVis3D: visualising molecular simulation deduced H-bond networks in 3D: application to T-cell receptor interactions. - Bernhard Knapp; Marta Alcalá; Hao Zhang; Clare E. West; P. Anton van der Merwe; Charlotte M. Deane (Bioinform., 2018)

MHC binding affects the dynamics of different T-cell receptors in different ways. - Bernhard Knapp; P. Anton van der Merwe; Omer Dushek; Charlotte M. Deane (PLoS Comput. Biol., 2019)

Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants. - Stuart A. MacGowan; Michael I. Barton; Mikhail Kutuzov; Omer Dushek; P. Anton van der Merwe; Geoffrey J. Barton (PLoS Comput. Biol., 2022)