Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage. - Oliver Sander; Tobias Sing; Ingolf Sommer; Andrew J. Low; Peter K. Cheung; P. Richard Harrigan; Thomas Lengauer; Francisco S. Domingues (PLoS Comput. Biol., 2007)

Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag. - Jonathan M. Carlson; Zabrina L. Brumme; Christine M. Rousseau; Chanson J. Brumme; Philippa Matthews; Carl Myers Kadie; James I. Mullins; Bruce D. Walker; P. Richard Harrigan; Philip J. R. Goulder; David Heckerman (PLoS Comput. Biol., 2008)

The Evolutionary Analysis of Emerging Low Frequency HIV-1 CXCR4 Using Variants through Time - An Ultra-Deep Approach. - John P. Archer; Andrew Rambaut; Bruce E. Taillon; P. Richard Harrigan; Marilyn Lewis; David L. Robertson (PLoS Comput. Biol., 2010)

Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data. - Art F. Y. Poon; Luke C. Swenson; Evelien M. Bunnik; Diana Edo-Matas; Hanneke Schuitemaker; Angélique B. van 't Wout; P. Richard Harrigan (PLoS Comput. Biol., 2012)

Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control. - István Bartha; Paul J. McLaren; Chanson J. Brumme; P. Richard Harrigan; Amalio Telenti; Jacques Fellay (PLoS Comput. Biol., 2017)