Compartimentation in Replicator Models. - Juan Carlos Nuño; Pablo Chacón; Alvaro Moreno; Federico Morán (ECAL, 1995)

Topology representing neural networks reconcile biomolecular shape, structure, and dynamics. - Willy Wriggers; Pablo Chacón; Julio A. Kovacs; Florence Tama; Stefan Birmanns (Neurocomputing, 2004)

Grid Multi-Resolution Docking. - José Ignacio Garzón; Eduardo Huedo; Rubén S. Montero; Ignacio Martín Llorente; Pablo Chacón (PDP, 2007)

ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage. - José Ignacio Garzón; Julio A. Kovacs; Ruben Abagyan; Pablo Chacón (Bioinform., 2007)

DFprot: a webtool for predicting local chain deformability. - José Ignacio Garzón; Julio A. Kovacs; Ruben Abagyan; Pablo Chacón (Bioinform., 2007)

Adaptation of a Multi-Resolution Docking Bioinformatics Application to the Grid. - José Ignacio Garzón; Eduardo Huedo; Rubén S. Montero; Ignacio Martín Llorente; Pablo Chacón (J. Softw., 2007)

FRODOCK: a new approach for fast rotational protein-protein docking. - José Ignacio Garzón; José Ramón López-Blanco; Carles Pons; Julio A. Kovacs; Ruben Abagyan; Juan Fernández-Recio; Pablo Chacón (Bioinform., 2009)

End-To-End Cache System for Grid Computing: Design and Efficiency Analysis of a High-Throughput Bioinformatic Docking Application. - José Ignacio Garzón; Eduardo Huedo; Rubén Santiago Montero; Ignacio Martín Llorente; Pablo Chacón (Int. J. High Perform. Comput. Appl., 2010)

iMod: multipurpose normal mode analysis in internal coordinates. - José Ramón López-Blanco; José Ignacio Garzón; Pablo Chacón (Bioinform., 2011)

Spinor product computations for protein conformations. - Pieter Chys; Pablo Chacón (J. Comput. Chem., 2012)

Exploring large macromolecular functional motions on clusters of multicore processors. - José Ramón López-Blanco; Ruymán Reyes; José Ignacio Aliaga; Rosa M. Badia; Pablo Chacón; Enrique S. Quintana-Ortí (J. Comput. Phys., 2013)

FRODRUG: A Virtual Screening GPU Accelerated Approach for Drug Discovery. - Santiago Garcia Sanchez; Erney Ramírez-Aportela; José Ignacio Garzón; Pablo Chacón; Antonio S. Montemayor; Raúl Cabido (PDP, 2014)

iMODS: internal coordinates normal mode analysis server. - José Ramón López-Blanco; José Ignacio Aliaga; Enrique S. Quintana-Ortí; Pablo Chacón (Nucleic Acids Res., 2014)

FRODOCK 2.0: fast protein-protein docking server. - Erney Ramírez-Aportela; José Ramón López-Blanco; Pablo Chacón (Bioinform., 2016)

A fast band-Krylov eigensolver for macromolecular functional motion simulation on multicore architectures and graphics processors. - José Ignacio Aliaga; Pedro Alonso 002; José M. Badía; Pablo Chacón; Davor Davidovic; José Ramón López-Blanco; Enrique S. Quintana-Ortí (J. Comput. Phys., 2016)

RCD+: Fast loop modeling server. - José Ramón López-Blanco; Alejandro Jesús Canosa-Valls; Yaohang Li; Pablo Chacón (Nucleic Acids Res., 2016)

KORP: knowledge-based 6D potential for fast protein and loop modeling. - José Ramón López-Blanco; Pablo Chacón (Bioinform., 2019)

KORP-PL: a coarse-grained knowledge-based scoring function for protein-ligand interactions. - Maria Kadukova; Karina dos Santos Machado; Pablo Chacón; Sergei Grudinin (Bioinform., 2021)

Atomic-level evolutionary information improves protein-protein interface scoring. - Chloé Quignot; Pierre Granger; Pablo Chacón; Raphaël Guérois; Jessica Andreani (Bioinform., 2021)

InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps. - Chloé Quignot; Guillaume Postic; Hélène Bret; Julien Rey; Pierre Granger; Samuel Murail; Pablo Chacón; Jessica Andreani; Pierre Tufféry; Raphaël Guérois (Nucleic Acids Res., 2021)

Using a Graph Transformer Network to Predict 3D Coordinates of Proteins via Geometric Algebra Modelling. - Alberto Pepe; Joan Lasenby; Pablo Chacón (ENGAGE, 2022)

Proposed Practical Overheight Detection and Alert System. - A. M. Aly; Pablo Chacón; H. Gol-Zaroudi; Jin-Woo Choi; George Z. Voyiadjis (Autom. Control. Comput. Sci., 2022)

Local Normal Mode Analysis for Fast Loop Conformational Sampling. - José Ramón López-Blanco; Yves Dehouck; Ugo Bastolla; Pablo Chacón (J. Chem. Inf. Model., 2022)

Predicting protein stability changes upon mutation using a simple orientational potential. - Iván Martín Hernández; Yves Dehouck; Ugo Bastolla; José Ramón López-Blanco; Pablo Chacón (Bioinform., 2023)