Design and implementation of a scalable constraint-based routing module for QoS path computation. - Pablo Gainza; Héctor Cancela 001; Eduardo Grampín; María E. Urquhart (LANC, 2007)

Protein Design Using Continuous Rotamers. - Pablo Gainza; Kyle E. Roberts; Bruce Randall Donald (PLoS Comput. Biol., 2012)

Computational Protein Design with Ensembles, Flexibility and Mathematical Guarantees, and its Application to Drug Resistance Prediction, and Antibody Design. - Pablo Gainza (2015)

OSPREY 3.0: Open-source protein redesign for you, with powerful new features. - Mark A. Hallen; Jeffrey W. Martin; Adegoke A. Ojewole; Jonathan D. Jou; Anna U. Lowegard; Marcel S. Frenkel; Pablo Gainza; Hunter M. Nisonoff; Aditya Mukund; Siyu Wang; Graham T. Holt; David Zhou; et al. (J. Comput. Chem., 2018)

Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus. - Siyu Wang; Stephanie M. Reeve; Graham T. Holt; Adegoke A. Ojewole; Marcel S. Frenkel; Pablo Gainza; Santosh Keshipeddy; Vance G. Fowler; Dennis L. Wright; Bruce Randall Donald (PLoS Comput. Biol., 2022)