Comparative genomics using web-based GeneOrder to determine synteny and to function as an annotation tool. - Padmanabhan Mahadevan; Donald Seto (BIOCOMP, 2006)

Comparative genomics using CoreGenes to analyze small bacterial genomes, with an application for the annotation of hypothetical proteins. - Padmanabhan Mahadevan; Donald Seto (BIOCOMP, 2007)

Data Mining Pathogen Genomes Using GeneOrder and CoreGenes: Gene Order, Synteny, and Proteomes. - Padmanabhan Mahadevan; Donald Seto (BIOCOMP, 2008)

In silico Proteome Parsing Analysis to Identify Core Sets of Proteins in Bacteriophages to Aid in Their Classification. - Padmanabhan Mahadevan; Donald Seto (BIOCOMP, 2009)

Data mining pathogen genomes using GeneOrder and CoreGenes and CGUG: gene order, synteny and in silico proteomes. - Padmanabhan Mahadevan; John F. King; Donald Seto (Int. J. Comput. Biol. Drug Des., 2009)

Prokaryotic Autolysin Database Construction. - Brandon A. Saiz; Padmanabhan Mahadevan (BCB, 2017)

Genome-Wide SNP Signal Intensity Scanning Revealed Genes Differentiating Cows with Ovarian Pathologies from Healthy Cows. - Ricardo Salomón-Torres; Martin F. Montaño-Gómez; Rafael Villa-Angulo; Víctor M. González-Vizcarra; Carlos Villa-Angulo; Gerardo E. Medina-Basulto; Noé Ortiz-Uribe; Padmanabhan Mahadevan; Victor Hugo Yaurima-Basaldua (Sensors, 2017)