Local sensitivity analysis of the 'Membrane shape equation' derived from the Helfrich energy. - Padmini Rangamani; Ali Behzadan; Michael J. Holst (CoRR, 2020)

Non-uniform distribution of myosin-mediated forces governs red blood cell membrane curvature through tension modulation. - Haleh Alimohamadi; Alyson S. Smith; Roberta B. Nowak; Velia M. Fowler; Padmini Rangamani (PLoS Comput. Biol., 2020)

Ten simple rules for women principal investigators during a pandemic. - Pamela K. Kreeger; Amy Brock; Holly C. Gibbs; K. Jane Grande-Allen; Alice H. Huang; Kristyn S. Masters; Padmini Rangamani; Michaela R. Reagan; Shannon L. Servoss (PLoS Comput. Biol., 2020)

3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries. - Christopher T. Lee; Justin G. Laughlin; Nils Angliviel de La Beaumelle; Rommie E. Amaro; James Andrew McCammon; Ravi Ramamoorthi; Michael J. Holst; Padmini Rangamani (PLoS Comput. Biol., 2020)

Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator. - Mariam Ordyan; Tom Bartol; Mary B. Kennedy; Padmini Rangamani; Terrence J. Sejnowski (PLoS Comput. Biol., 2020)

Mem3DG: Modeling Membrane Mechanochemical Dynamics in 3D using Discrete Differential Geometry. - Cuncheng Zhu; Christopher T. Lee; Padmini Rangamani (CoRR, 2021)

Nanoscale organization of ryanodine receptor distribution and phosphorylation pattern determines the dynamics of calcium sparks. - María Hernández Mesa; Jonas van den Brink; William E. Louch; Kimberly J. McCabe; Padmini Rangamani (PLoS Comput. Biol., 2022)

Bayesian parameter estimation for dynamical models in systems biology. - Nathaniel J. Linden; Boris Kramer; Padmini Rangamani (PLoS Comput. Biol., 2022)

Correction: Bayesian parameter estimation for dynamical models in systems biology. - Nathaniel J. Linden; Boris Kramer; Padmini Rangamani (PLoS Comput. Biol., 2023)

SMART: Spatial Modeling Algorithms for Reactions and Transport. - Justin G. Laughlin; Jørgen S. Dokken; Henrik Nicolay Topnes Finsberg; Emmet A. Francis; Christopher T. Lee; Marie E. Rognes; Padmini Rangamani (J. Open Source Softw., 2023)

Effective cell membrane tension protects red blood cells against malaria invasion. - Haleh Alimohamadi; Padmini Rangamani (PLoS Comput. Biol., 2023)

Modeling cardiomyocyte signaling and metabolism predicts genotype-to-phenotype mechanisms in hypertrophic cardiomyopathy. - Ali Khalilimeybodi; Jeffrey J. Saucerman; Padmini Rangamani (Comput. Biol. Medicine, 2024)

Spatiotemporal orchestration of calcium-cAMP oscillations on AKAP/AC nanodomains is governed by an incoherent feedforward loop. - Lingxia Qiao; Michael Getz; Ben Gross; Brian Tenner; Jin Zhang; Padmini Rangamani (PLoS Comput. Biol., 2024)

Spatial modeling algorithms for reactions and transport in biological cells. - Emmet A. Francis; Justin G. Laughlin; Jørgen S. Dokken; Henrik Nicolay Topnes Finsberg; Christopher T. Lee; Marie E. Rognes; Padmini Rangamani (Nat. Comput. Sci., 2025)

Author Correction: Spatial modeling algorithms for reactions and transport in biological cells. - Emmet A. Francis; Justin G. Laughlin; Jørgen S. Dokken; Henrik Nicolay Topnes Finsberg; Christopher T. Lee; Marie E. Rognes; Padmini Rangamani (Nat. Comput. Sci., 2025)