Ontology-Based Integration for Relational Data. - Dejing Dou; Paea LePendu (OTM Workshops, 2005)

Integrating Databases into the Semantic Web through an Ontology-Based Framework. - Dejing Dou; Paea LePendu; Shiwoong Kim; Peishen Qi (ICDE Workshops, 2006)

Ontology-based integration for relational databases. - Dejing Dou; Paea LePendu (SAC, 2006)

Discovering Executable Semantic Mappings Between Ontologies. - Han Qin; Dejing Dou; Paea LePendu (OTM Conferences (1), 2007)

Ontology Database: A New Method for Semantic Modeling and an Application to Brainwave Data. - Paea LePendu; Dejing Dou; Gwen A. Frishkoff; Jiawei Rong (SSDBM, 2008)

Detecting Inconsistencies in the Gene Ontology Using Ontology Databases with Not-gadgets. - Paea LePendu; Dejing Dou; Douglas G. Howe (OTM Conferences (2), 2009)

Optimize First, Buy Later: Analyzing Metrics to Ramp-Up Very Large Knowledge Bases. - Paea LePendu; Natalya Fridman Noy; Clément Jonquet; Paul R. Alexander; Nigam H. Shah; Mark A. Musen (ISWC (1), 2010)

Ontograte: towards Automatic Integration for Relational Databases and the Semantic Web through an Ontology-Based Framework. - Dejing Dou; Han Qin; Paea LePendu (Int. J. Semantic Comput., 2010)

Ontology-Based Analysis of Event-Related Potentials. - Gwen A. Frishkoff; Robert M. Frank; Paea LePendu (ICBO, 2011)

The Age of Data-Driven Medicine: Mining the Electronic Health Record. - Paea LePendu; Mark A. Musen; Nigam H. Shah (ICBO, 2011)

A Hypergraph-based Method for Discovering Semantically Associated Itemsets. - Haishan Liu; Paea LePendu; Ruoming Jin; Dejing Dou (ICDM, 2011)

Enabling enrichment analysis with the Human Disease Ontology. - Paea LePendu; Mark A. Musen; Nigam H. Shah (J. Biomed. Informatics, 2011)

Using ontology databases for scalable query answering, inconsistency detection, and data integration. - Paea LePendu; Dejing Dou (J. Intell. Inf. Syst., 2011)

NCBO Resource Index: Ontology-based search and mining of biomedical resources. - Clément Jonquet; Paea LePendu; Sean M. Falconer; Adrien Coulet; Natalya Fridman Noy; Mark A. Musen; Nigam H. Shah (J. Web Semant., 2011)

Performance of Left Outer Join on Hadoop with Right Side within Single Node Memory Size. - Byambajargal Byambajav; Tomasz Wiktor Wlodarczyk; Chunming Rong; Paea LePendu; Nigam Shah (AINA Workshops, 2012)

Annotation Analysis for Testing Drug Safety Signals using Unstructured Clinical Notes. - Paea LePendu; Srinivasan V Iyer 002; Cédrick Fairon; Nigam H. Shah (J. Biomed. Semant., 2012)

Using ontology-based annotation to profile disease research. - Yi Liu; Adrien Coulet; Paea LePendu; Nigam H. Shah (J. Am. Medical Informatics Assoc., 2012)

Predictive Models in Mental Health: From Diagnosis to Treatment. - Sandy Huang; Paea LePendu; Srinivasan V Iyer 002; Ming Tai-Seale; David Carrell; Nigam Shah (AMIA, 2013)

Learning Practice-based Evidence from Unstructured Clinical Notes. - Nigam Shah; Paea LePendu; Anna Bauer-Mehren; Srinivasan V Iyer 002; Kenneth Jung; Tyler Cole; Rave Harpaz (AMIA, 2013)

Refining health outcomes of interest using formal concept analysis and semantic query expansion. - Olivier Curé; Henri Maurer; Nigam Shah; Paea LePendu (DTMBIO, 2013)

Mining Biomedical Ontologies and Data Using RDF Hypergraphs. - Haishan Liu; Dejing Dou; Ruoming Jin; Paea LePendu; Nigam Shah (ICMLA (1), 2013)

Empirical bayes model to combine signals of adverse drug reactions. - Rave Harpaz; William DuMouchel; Paea LePendu; Nigam H. Shah (KDD, 2013)

Finding progression stages in time-evolving event sequences. - Jaewon Yang; Julian J. McAuley; Jure Leskovec; Paea LePendu; Nigam Shah (WWW, 2014)

Toward personalizing treatment for depression: predicting diagnosis and severity. - Sandy Huang; Paea LePendu; Srinivasan V Iyer 002; Ming Tai-Seale; David Carrell; Nigam H. Shah (J. Am. Medical Informatics Assoc., 2014)

Mining clinical text for signals of adverse drug-drug interactions. - Srinivasan V Iyer 002; Rave Harpaz; Paea LePendu; Anna Bauer-Mehren; Nigam H. Shah (J. Am. Medical Informatics Assoc., 2014)

Cross-domain targeted ontology subsets for annotation: The case of SNOMED CORE and RxNorm. - Pablo López-García; Paea LePendu; Mark A. Musen; Arantza Illarramendi (J. Biomed. Informatics, 2014)

Functional evaluation of out-of-the-box text-mining tools for data-mining tasks. - Kenneth Jung; Paea LePendu; Srinivasan Iyer 002; Anna Bauer-Mehren; Bethany Percha; Nigam H. Shah (J. Am. Medical Informatics Assoc., 2015)

A formal concept analysis and semantic query expansion cooperation to refine health outcomes of interest. - Olivier C. Curé; Henri Maurer; Nigam H. Shah; Paea LePendu (BMC Medical Informatics Decis. Mak., 2015)

The HII-C Knowledge-Based App Project: Goals and Design Approach. - Austin Michne; Andrew J. Solomon; Yael Ozair; Kaan Aksoy; Paea LePendu; Robert A. Greenes (AMIA, 2018)

Summer Coding Camp as a Gateway to STEM. - Paea LePendu; Cecilia Cheung; Mariam Salloum; Pamela Sheffler; Kelly Downey (SIGCSE, 2020)

Broadening Participation: The Data Science Academy for K-12. - Taneesha Sharma; Paea LePendu (SIGCSE (2), 2023)

KB2Bench: Toward a Benchmark Framework for Large Language Models on Medical Knowledge. - Douglas Adjei-Frempah; Lisa Chen; Paea LePendu (ICTAI, 2024)

Data Science Academy: K-12 Broadening Participation Program Conducted by Undergraduate Students. - Shirin Haji Amin Shirazi; Paea LePendu; Mariam Salloum (J. Comput. Sci. Coll., 2025)