Lost in translation: an assessment and perspective for computational microRNA target identification. - Panagiotis Alexiou; Manolis Maragkakis; Giorgos L. Papadopoulos; Martin Reczko; Artemis G. Hatzigeorgiou (Bioinform., 2009)

DIANA-mirPath: Integrating human and mouse microRNAs in pathways. - Giorgos L. Papadopoulos; Panagiotis Alexiou; Manolis Maragkakis; Martin Reczko; Artemis G. Hatzigeorgiou (Bioinform., 2009)

Accurate microRNA target prediction correlates with protein repression levels. - Manolis Maragkakis; Panagiotis Alexiou; Giorgos L. Papadopoulos; Martin Reczko; Theodore Dalamagas 001; Giorgos Giannopoulos; George I. Goumas; Evangelos Koukis; Kornilios Kourtis; Victor A. Simossis; Praveen Sethupathy; Thanasis Vergoulis; et al. (BMC Bioinform., 2009)

DIANA-microT web server: elucidating microRNA functions through target prediction. - Manolis Maragkakis; Martin Reczko; Victor A. Simossis; Panagiotis Alexiou; Giorgos L. Papadopoulos; Theodore Dalamagas 001; Giorgos Giannopoulos; Georgios I. Goumas; Evangelos Koukis; Kornilios Kourtis; Thanasis Vergoulis; Nectarios Koziris; et al. (Nucleic Acids Res., 2009)

miRGen 2.0: a database of microRNA genomic information and regulation. - Panagiotis Alexiou; Thanasis Vergoulis; Martin Gleditzsch; George Prekas; Theodore Dalamagas 001; Molly Megraw; Ivo Grosse; Timos K. Sellis; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2010)

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. - Manolis Maragkakis; Thanasis Vergoulis; Panagiotis Alexiou; Martin Reczko; Kyriaki Plomaritou; Mixail Gousis; Kornilios Kourtis; Nectarios Koziris; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2011)

Development of computational systems for the study of the expression and function of miRNAs - Panagiotis Alexiou (2011)

An improved neural network ensemble model of Aldose Reductase inhibitory activity. - B. Keshavarz Hedayati; Rafael Parra-Hernandez; Erik M. Laxdal; Nikitas J. Dimopoulos; Panagiotis Alexiou; V. J. Demopoulos (IJCNN, 2012)

Functional microRNA targets in protein coding sequences. - Martin Reczko; Manolis Maragkakis; Panagiotis Alexiou; Ivo Grosse; Artemis G. Hatzigeorgiou (Bioinform., 2012)

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. - Thanasis Vergoulis; Ioannis S. Vlachos; Panagiotis Alexiou; George Georgakilas; Manolis Maragkakis; Martin Reczko; Stefanos Gerangelos; Nectarios Koziris; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2012)

DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs. - Nikos Perdikopanis; Georgios K. Georgakilas; Dimitris Grigoriadis; Vasileios Pierros; Ioannis Kavakiotis; Panagiotis Alexiou; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2021)

Agentomics-ML: Autonomous Machine Learning Experimentation Agent for Genomic and Transcriptomic Data. - Vlastimil Martinek; Andrea Gariboldi; Dimosthenis Tzimotoudis; Aitor Alberdi Escudero; Edward Blake; David Cechak; Luke Benjamin Cassar; Alessandro Balestrucci; Panagiotis Alexiou (CoRR, 2025)