HADDOCK2P2I: A Biophysical Model for Predicting the Binding Affinity of Protein-Protein Interaction Inhibitors. - Panagiotis L. Kastritis; João P. G. L. M. Rodrigues; Alexandre M. J. J. Bonvin (J. Chem. Inf. Model., 2014)

PRODIGY: a web server for predicting the binding affinity of protein-protein complexes. - Li C. Xue; João P. G. L. M. Rodrigues; Panagiotis L. Kastritis; Alexandre M. J. J. Bonvin; Anna Vangone (Bioinform., 2016)

Insights on cross-species transmission of SARS-CoV-2 from structural modeling. - João P. G. L. M. Rodrigues; Susana Barrera-Vilarmau; João M. C. Teixeira; Marija Sorokina; Elizabeth Seckel; Panagiotis L. Kastritis; Michael Levitt 001 (PLoS Comput. Biol., 2020)