An Innovative Protocol for Comparing Protein Binding Sites via Atomic Grid Maps. - Manuele Bicego; Angelo D. Favia; Paola Bisignano; Andrea Cavalli; Vittorio Murino (KDIR, 2011)

SERAPhiC: A Benchmark for in Silico Fragment-Based Drug Design. - Angelo D. Favia; Giovanni Bottegoni; Irene Nobeli; Paola Bisignano; Andrea Cavalli (J. Chem. Inf. Model., 2011)

In Silico Deconstruction of ATP-Competitive Inhibitors of Glycogen Synthase Kinase-3β. - Paola Bisignano; Chiara Lambruschini; Manuele Bicego; Vittorio Murino; Angelo D. Favia; Andrea Cavalli (J. Chem. Inf. Model., 2012)

PLI: a web-based tool for the comparison of protein-ligand interactions observed on PDB structures. - Anna Maria Gallina; Paola Bisignano; Maurizio Bergamino; Domenico Bordo (Bioinform., 2013)

Kinetic Characterization of Fragment Binding in AmpC β-Lactamase by High-Throughput Molecular Simulations. - Paola Bisignano; Stefan Doerr; Matt J. Harvey; Angelo D. Favia; Andrea Cavalli; Gianni De Fabritiis (J. Chem. Inf. Model., 2014)

Ligand-Based Discovery of a New Scaffold for Allosteric Modulation of the μ-Opioid Receptor. - Paola Bisignano; Neil T. Burford; Yi Shang; Brennica Marlow; Kathryn E. Livingston; Abigail M. Fenton; Kristin Rockwell; Lauren Budenholzer; John R. Traynor; Samuel W. Gerritz; Andrew Alt; Marta Filizola (J. Chem. Inf. Model., 2015)

A kinetic mechanism for enhanced selectivity of membrane transport. - Paola Bisignano; Michael A. Lee; August George; Daniel M. Zuckerman; Michael Grabe; John M. Rosenberg (PLoS Comput. Biol., 2020)

A systems-biology approach to molecular machines: Exploration of alternative transporter mechanisms. - August George; Paola Bisignano; John M. Rosenberg; Michael Grabe; Daniel M. Zuckerman (PLoS Comput. Biol., 2020)