FILO (Field Interaction Ligand Optimization): A simplex strategy for searching the optimal ligand interaction field in drug design. - Fabrizio Melani; Paola Gratteri; Michele Adamo; Claudia Bonaccini (J. Comput. Aided Mol. Des., 2001)

GRIND-derived pharmacophore model for a series of α-tropanyl derivative ligands of the sigma-2 receptor*. - Paola Cratteri; Maria Novella Romanelli; Gabriele Cruciani; Claudia Bonaccini; Fabrizio Melani (J. Comput. Aided Mol. Des., 2004)

Insights into docking and scoring neuronal alpha4beta2 nicotinic receptor agonists using molecular dynamics simulations and QM/MM calculations. - Jacopo Sgrignani; Claudia Bonaccini; Giovanni Grazioso; Matteo Chioccioli; Andrea Cavalli; Paola Gratteri (J. Comput. Chem., 2009)

Insights into the Conformational Switching Mechanism of the Human Vascular Endothelial Growth Factor Receptor Type 2 Kinase Domain. - Matteo Chioccioli; Simone Marsili; Claudia Bonaccini; Piero Procacci; Paola Gratteri (J. Chem. Inf. Model., 2012)